| http://purl.uniprot.org/unirules/MF_00322#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:130346 up:source unirule:MF_00322 .
_:130347 up:source unirule:MF_00322 .
_:130348 up:source unirule:MF_00322 .
_:130349 up:source unirule:MF_00322 .
_:130350 up:source unirule:MF_00322 .
_:130351 up:source unirule:MF_00322 .
_:130352 up:source unirule:MF_00322 .
_:130353 up:source unirule:MF_00322 .
_:130354 up:source unirule:MF_00322 .
_:130355 up:source unirule:MF_00322 .
_:130356 up:source unirule:MF_00322 .
_:130357 up:source unirule:MF_00322 .
_:130358 up:source unirule:MF_00322 .
_:130359 up:source unirule:MF_00322 .
_:130360 up:source unirule:MF_00322 .
_:130361 up:source unirule:MF_00322 .
_:130362 up:source unirule:MF_00322 .
_:130363 up:source unirule:MF_00322 .
_:130364 up:source unirule:MF_00322 .
_:130365 up:source unirule:MF_00322 .
_:130366 up:source unirule:MF_00322 .
_:130367 up:source unirule:MF_00322 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0005524 ,
GO:0006260 ,
GO:0006265 ,
keyword:238 ,
keyword:413 ,
keyword:547 ,
keyword:67 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'Type 2 DNA topoisomerase 6 subunit B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Type II DNA topoisomerase VI subunit B' ;
up:shortName 'TopoVI-B' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'top6B' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Relaxes both positive and negative superturns and exhibits a strong decatenase activity.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Heterotetramer of two Top6A and two Top6B chains.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TOP6B family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:30616 .
_:130368 a rdf:Statement ;
up:attribution _:130346 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:130369 a rdf:Statement ;
up:attribution _:130347 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:130370 a rdf:Statement ;
up:attribution _:130348 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:130371 a rdf:Statement ;
up:attribution _:130349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:130372 a rdf:Statement ;
up:attribution _:130350 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:130373 a rdf:Statement ;
up:attribution _:130351 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:130374 a rdf:Statement ;
up:attribution _:130352 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:130375 a rdf:Statement ;
up:attribution _:130353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:130376 a rdf:Statement ;
up:attribution _:130354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:130377 a rdf:Statement ;
up:attribution _:130355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:130378 a rdf:Statement ;
up:attribution _:130356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:130379 a rdf:Statement ;
up:attribution _:130357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:130380 a rdf:Statement ;
up:attribution _:130358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:130381 a rdf:Statement ;
up:attribution _:130359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:130382 a rdf:Statement ;
up:attribution _:130360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:130383 a rdf:Statement ;
up:attribution _:130361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:130384 a rdf:Statement ;
up:attribution _:130362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006260 .
_:130385 a rdf:Statement ;
up:source unirule:MF_00322 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:130386 a rdf:Statement ;
up:attribution _:130363 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:130387 a rdf:Statement ;
up:source unirule:MF_00322 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:130388 a rdf:Statement ;
up:attribution _:130364 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:130389 a rdf:Statement ;
up:source unirule:MF_00322 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:130390 a rdf:Statement ;
up:attribution _:130365 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:130391 a rdf:Statement ;
up:source unirule:MF_00322 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:130392 a rdf:Statement ;
up:attribution _:130366 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:130393 a rdf:Statement ;
up:source unirule:MF_00322 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:130394 a rdf:Statement ;
up:attribution _:130367 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00322
#Rule MF_00322 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-14
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00322 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00322 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00322a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionO0520748 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520750 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032243 .
?templateMotifSequenceMatchRegionO0520748 faldo:begin ?templateMotifSequenceMatchBeginO0520749 .
?templateMotifSequenceMatchBeginO0520749 faldo:position ?templateMotifSequenceMatchBeginPositionO0520744 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520750 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032245 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032253 .
?targetMotifMatchRegionMatchBeginMF_0032253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032254 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032243, 1, (STRLEN(?templateMotifCigarO05207MF_0032243) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032243, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO0520744) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032245, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032245) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032245, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032245) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0032246) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032243, 1, (STRLEN(?templateMotifCigarO05207MF_0032243) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032243, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionO0520744) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032245, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032245) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032245, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032245) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0032246) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[ST][KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionO0520765 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520767 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032260 .
?templateMotifSequenceMatchRegionO0520765 faldo:begin ?templateMotifSequenceMatchBeginO0520766 .
?templateMotifSequenceMatchBeginO0520766 faldo:position ?templateMotifSequenceMatchBeginPositionO0520761 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520767 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032262 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032270 .
?targetMotifMatchRegionMatchBeginMF_0032270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032271 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032260, 1, (STRLEN(?templateMotifCigarO05207MF_0032260) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032260, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionO0520761) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032262, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032262) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032262, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032262) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0032263) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032260, 1, (STRLEN(?templateMotifCigarO05207MF_0032260) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032260, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionO0520761) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032262, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032262) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032262, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032262) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0032263) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[LIV]G[ARNDCQEGHILKMFPSTWYVBZJUOX][KSA]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionO0520782 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520784 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032277 .
?templateMotifSequenceMatchRegionO0520782 faldo:begin ?templateMotifSequenceMatchBeginO0520783 .
?templateMotifSequenceMatchBeginO0520783 faldo:position ?templateMotifSequenceMatchBeginPositionO0520778 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520784 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032279 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032287 .
?targetMotifMatchRegionMatchBeginMF_0032287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032288 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032277, 1, (STRLEN(?templateMotifCigarO05207MF_0032277) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032277, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO0520778) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032279, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032279) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032279, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032279) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0032280) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionO0520797 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520799 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032292 .
?templateMotifSequenceMatchRegionO0520797 faldo:begin ?templateMotifSequenceMatchBeginO0520798 .
?templateMotifSequenceMatchBeginO0520798 faldo:position ?templateMotifSequenceMatchBeginPositionO0520793 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520799 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00322103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032294 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00322102 .
?targetMotifMatchRegionMatchBeginMF_00322102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00322103 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032292, 1, (STRLEN(?templateMotifCigarO05207MF_0032292) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032292, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionO0520793) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032294, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032294) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032294, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032294) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0032295) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionO05207112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO05207114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_00322107 .
?templateMotifSequenceMatchRegionO05207112 faldo:begin ?templateMotifSequenceMatchBeginO05207113 .
?templateMotifSequenceMatchBeginO05207113 faldo:position ?templateMotifSequenceMatchBeginPositionO05207108 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO05207114 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00322118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_00322109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00322117 .
?targetMotifMatchRegionMatchBeginMF_00322117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00322110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00322118 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_00322107, 1, (STRLEN(?templateMotifCigarO05207MF_00322107) - STRLEN(REPLACE(?templateMotifCigarO05207MF_00322107, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionO05207108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_00322109, 1, (STRLEN(?targetMotifMatchCigarO05207MF_00322109) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_00322109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_00322109, 1, (STRLEN(?targetMotifMatchCigarO05207MF_00322109) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_00322109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00322110) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00322a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
}
"xsd:string |
