| http://purl.uniprot.org/unirules/MF_00426#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:168279 up:source unirule:MF_00426 .
_:168280 up:source unirule:MF_00426 .
_:168281 up:source unirule:MF_00426 .
_:168282 up:source unirule:MF_00426 .
_:168283 up:source unirule:MF_00426 .
_:168284 up:source unirule:MF_00426 .
_:168285 up:source unirule:MF_00426 .
_:168286 up:source unirule:MF_00426 .
_:168287 up:source unirule:MF_00426 .
_:168288 up:source unirule:MF_00426 .
_:168289 up:source unirule:MF_00426 .
_:168290 up:source unirule:MF_00426 .
_:168291 up:source unirule:MF_00426 .
_:168292 up:source unirule:MF_00426 .
_:168293 up:source unirule:MF_00426 .
_:168294 up:source unirule:MF_00426 .
_:168295 up:source unirule:MF_00426 .
_:168296 up:source unirule:MF_00426 .
_:168297 up:source unirule:MF_00426 .
_:168298 up:source unirule:MF_00426 .
_:168299 up:source unirule:MF_00426 .
_:168300 up:source unirule:MF_00426 .
_:168301 up:source unirule:MF_00426 .
_:168302 up:source unirule:MF_00426 .
_:168303 up:source unirule:MF_00426 .
_:168304 up:source unirule:MF_00426 .
_:168305 up:source unirule:MF_00426 .
_:168306 up:source unirule:MF_00426 .
_:168307 up:source unirule:MF_00426 .
_:168308 up:source unirule:MF_00426 .
_:168309 up:source unirule:MF_00426 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0005886 ,
GO:0006814 ,
GO:0016655 ,
keyword:1003 ,
keyword:1133 ,
keyword:1278 ,
keyword:285 ,
keyword:288 ,
keyword:406 ,
keyword:472 ,
keyword:520 ,
keyword:739 ,
keyword:812 ,
keyword:813 ,
keyword:830 ,
keyword:915 ;
up:recommendedName ?name0 .
?name0 up:ecName '7.2.1.1' ;
up:fullName 'Na(+)-translocating NADH-quinone reductase subunit B' ;
up:shortName 'Na(+)-NQR subunit B' ,
'Na(+)-translocating NQR subunit B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NQR complex subunit B' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'NQR-1 subunit B' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'nqrB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NqrB/RnfD family.' .
?case10 up:classifiedWith keyword:597 .
?case11 up:classifiedWith keyword:997 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'FMN phosphoryl threonine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?sam19 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane20 faldo:begin ?transmembraneb21 ;
faldo:end ?transmembranee22 .
?transmembraneb21 faldo:position ?transmembranebp23 .
?transmembranee22 faldo:position ?transmembraneep24 .
?keyword25 up:range ?transmembrane20 .
?keyword26 up:range ?transmembrane20 .
?keyword27 up:range ?transmembrane20 .
_:168310 a rdf:Statement ;
up:attribution _:168279 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:168311 a rdf:Statement ;
up:attribution _:168280 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:168312 a rdf:Statement ;
up:attribution _:168281 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:168313 a rdf:Statement ;
up:attribution _:168282 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:168314 a rdf:Statement ;
up:attribution _:168283 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:168315 a rdf:Statement ;
up:attribution _:168284 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:168316 a rdf:Statement ;
up:attribution _:168285 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:168317 a rdf:Statement ;
up:attribution _:168286 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:168318 a rdf:Statement ;
up:attribution _:168287 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:168319 a rdf:Statement ;
up:attribution _:168288 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:168320 a rdf:Statement ;
up:attribution _:168289 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:168321 a rdf:Statement ;
up:attribution _:168290 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:830 .
_:168322 a rdf:Statement ;
up:attribution _:168291 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:168323 a rdf:Statement ;
up:attribution _:168292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:168324 a rdf:Statement ;
up:attribution _:168293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:915 .
_:168325 a rdf:Statement ;
up:attribution _:168294 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:739 .
_:168326 a rdf:Statement ;
up:attribution _:168295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:168327 a rdf:Statement ;
up:attribution _:168296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:168328 a rdf:Statement ;
up:attribution _:168297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:168329 a rdf:Statement ;
up:attribution _:168298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:168330 a rdf:Statement ;
up:attribution _:168299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:168331 a rdf:Statement ;
up:attribution _:168300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:168332 a rdf:Statement ;
up:attribution _:168301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016655 .
_:168333 a rdf:Statement ;
up:attribution _:168302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006814 .
_:168334 a rdf:Statement ;
up:attribution _:168303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:168335 a rdf:Statement ;
up:attribution _:168304 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:168336 a rdf:Statement ;
up:attribution _:168305 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:168337 a rdf:Statement ;
up:source unirule:MF_00426 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:168338 a rdf:Statement ;
up:attribution _:168306 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:168339 a rdf:Statement ;
up:attribution _:168307 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:168340 a rdf:Statement ;
up:attribution _:168308 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:168341 a rdf:Statement ;
up:attribution _:168309 ;
rdf:subject ?sam19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00426
#Rule MF_00426 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00426 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00426a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch32 faldo:location ?templateMotifSequenceMatchRegionQ5658733 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5658735 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56587MF_0042628 .
?templateMotifSequenceMatchRegionQ5658733 faldo:begin ?templateMotifSequenceMatchBeginQ5658734 .
?templateMotifSequenceMatchBeginQ5658734 faldo:position ?templateMotifSequenceMatchBeginPositionQ5658729 ;
faldo:reference isoform:Q56587-1 .
?templateMotifSequenceProfileAlignmentOperationQ5658735 edam:has_input signature:MF_00426 ;
rdf:type edam:operation_0300 .
?targetMotifMatch36 faldo:location ?targetMotifMatchRegionMatch37 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0042639 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56587MF_0042630 .
?targetMotifMatchRegionMatch37 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0042638 .
?targetMotifMatchRegionMatchBeginMF_0042638 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0042631 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0042639 edam:has_input signature:MF_00426 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56587MF_0042628, 1, (STRLEN(?templateMotifCigarQ56587MF_0042628) - STRLEN(REPLACE(?templateMotifCigarQ56587MF_0042628, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionQ5658729) + 1)), '}'), '')))), '[a-z]', '')) AS ?step140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56587MF_0042630, 1, (STRLEN(?targetMotifMatchCigarQ56587MF_0042630) - STRLEN(REPLACE(?targetMotifMatchCigarQ56587MF_0042630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56587MF_0042630, 1, (STRLEN(?targetMotifMatchCigarQ56587MF_0042630) - STRLEN(REPLACE(?targetMotifMatchCigarQ56587MF_0042630, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step140), '}'), '')))), '[^-]', ''))) AS ?step241) .
BIND(((?step241 + ?targetMotifMatchRegionMatchBeginPositionMF_0042631) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag43) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag43, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p44 .
?p44 skos:narrower .
}
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p45 .
?p45 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p46 .
?p46 skos:narrower .
}
}
BIND(?this AS ?case12) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane47 ;
up:sequence ?thisSequence .
?samtransmembrane47 up:range ?samtransmembraner48 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner48 faldo:begin ?samtransmembraneb49 ;
faldo:end ?samtransmembranee50 .
?samtransmembraneb49 faldo:position ?samtransmembranebp51 ;
faldo:reference ?thisSequence .
?samtransmembranee50 faldo:position ?samtransmembraneep52 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam19) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00426a25')) AS ?keyword25) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a26')) AS ?keyword26) .
BIND(URI(CONCAT(STR(?this), '#MF_00426a27')) AS ?keyword27) .
}
"xsd:string |
