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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-102 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-16 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-118 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-126 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-14 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-115 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-121 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-123 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-124 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-119 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_00449#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00449#construct-template-117 |
| http://purl.uniprot.org/unirules/MF_00449#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00449#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00449#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00449#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00449#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00449#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:178181 up:source unirule:MF_00449 . _:178182 up:source unirule:MF_00449 . _:178183 up:source unirule:MF_00449 . _:178184 up:source unirule:MF_00449 . _:178185 up:source unirule:MF_00449 . _:178186 up:source unirule:MF_00449 . _:178187 up:source unirule:MF_00449 . _:178188 up:source unirule:MF_00449 . _:178189 up:source unirule:MF_00449 . _:178190 up:source unirule:MF_00449 . _:178191 up:source unirule:MF_00449 . _:178192 up:source unirule:MF_00449 . _:178193 up:source unirule:MF_00449 . _:178194 up:source unirule:MF_00449 . _:178195 up:source unirule:MF_00449 . _:178196 up:source unirule:MF_00449 . _:178197 up:source unirule:MF_00449 . _:178198 up:source unirule:MF_00449 . _:178199 up:source unirule:MF_00449 . _:178200 up:source unirule:MF_00449 . _:178201 up:source unirule:MF_00449 . _:178202 up:source unirule:MF_00449 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0005524 , GO:0006302 , GO:0016887 , keyword:227 , keyword:234 , keyword:378 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:fullName 'DNA double-strand break repair Rad50 ATPase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'rad50' . ?annotation2 a up:Subunit_Annotation ; rdfs:comment 'Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SMC family. RAD50 subfamily.' . ?case4 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs7 up:annotation ?annotation8 , ?annotation14 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:29105 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:29105 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:30616 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:30616 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:30616 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:30616 . ?sam48 up:classifiedWith keyword:175 . ?coiledCoil49 faldo:begin ?coiledCoilb50 ; faldo:end ?coiledCoile51 . ?coiledCoilb50 faldo:position ?coiledCoilbp52 . ?coiledCoile51 faldo:position ?coiledCoilep53 . ?keyword54 up:range ?coiledCoil49 . _:178203 a rdf:Statement ; up:attribution _:178181 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:178204 a rdf:Statement ; up:attribution _:178182 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:178205 a rdf:Statement ; up:attribution _:178183 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:178206 a rdf:Statement ; up:attribution _:178184 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:178207 a rdf:Statement ; up:attribution _:178185 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:178208 a rdf:Statement ; up:attribution _:178186 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:178209 a rdf:Statement ; up:attribution _:178187 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:178210 a rdf:Statement ; up:attribution _:178188 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:178211 a rdf:Statement ; up:attribution _:178189 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:178212 a rdf:Statement ; up:attribution _:178190 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:178213 a rdf:Statement ; up:attribution _:178191 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016887 . _:178214 a rdf:Statement ; up:attribution _:178192 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006302 . _:178215 a rdf:Statement ; up:attribution _:178193 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:178216 a rdf:Statement ; up:attribution _:178194 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:178217 a rdf:Statement ; up:attribution _:178195 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:178218 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:178219 a rdf:Statement ; up:attribution _:178196 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:178220 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:178221 a rdf:Statement ; up:attribution _:178197 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:178222 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:178223 a rdf:Statement ; up:attribution _:178198 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:178224 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:178225 a rdf:Statement ; up:attribution _:178199 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:178226 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:178227 a rdf:Statement ; up:attribution _:178200 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:178228 a rdf:Statement ; up:source unirule:MF_00449 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:178229 a rdf:Statement ; up:attribution _:178201 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:178230 a rdf:Statement ; up:attribution _:178202 ; rdf:subject ?sam48 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00449 #Rule MF_00449 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00449 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00449a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00449a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00449a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP5830160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5830162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP58301MF_0044955 . ?templateMotifSequenceMatchRegionP5830160 faldo:begin ?templateMotifSequenceMatchBeginP5830161 . ?templateMotifSequenceMatchBeginP5830161 faldo:position ?templateMotifSequenceMatchBeginPositionP5830156 ; faldo:reference isoform:P58301-1 . ?templateMotifSequenceProfileAlignmentOperationP5830162 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . ?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0044966 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP58301MF_0044957 . ?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0044965 . ?targetMotifMatchRegionMatchBeginMF_0044965 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044958 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0044966 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044955, 1, (STRLEN(?templateMotifCigarP58301MF_0044955) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044955, CONCAT('^(?:-*[^-]){', STR(((444 - ?templateMotifSequenceMatchBeginPositionP5830156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044957, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044957) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044957, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044957, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044957) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044957, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0044958) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044955, 1, (STRLEN(?templateMotifCigarP58301MF_0044955) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044955, CONCAT('^(?:-*[^-]){', STR(((447 - ?templateMotifSequenceMatchBeginPositionP5830156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044957, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044957) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044957, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044957, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044957) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044957, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) . BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0044958) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP5830178 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5830180 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP58301MF_0044973 . ?templateMotifSequenceMatchRegionP5830178 faldo:begin ?templateMotifSequenceMatchBeginP5830179 . ?templateMotifSequenceMatchBeginP5830179 faldo:position ?templateMotifSequenceMatchBeginPositionP5830174 ; faldo:reference isoform:P58301-1 . ?templateMotifSequenceProfileAlignmentOperationP5830180 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . ?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0044984 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP58301MF_0044975 . ?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0044983 . ?targetMotifMatchRegionMatchBeginMF_0044983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044976 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0044984 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044973, 1, (STRLEN(?templateMotifCigarP58301MF_0044973) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044973, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP5830174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044975, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044975) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044975, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044975) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) . BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0044976) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044973, 1, (STRLEN(?templateMotifCigarP58301MF_0044973) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044973, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP5830174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044975, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044975) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044975, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044975) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0044976) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs2t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('N[GA][SA]GK[ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_00449a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP5830195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5830197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP58301MF_0044990 . ?templateMotifSequenceMatchRegionP5830195 faldo:begin ?templateMotifSequenceMatchBeginP5830196 . ?templateMotifSequenceMatchBeginP5830196 faldo:position ?templateMotifSequenceMatchBeginPositionP5830191 ; faldo:reference isoform:P58301-1 . ?templateMotifSequenceProfileAlignmentOperationP5830197 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00449101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP58301MF_0044992 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00449100 . ?targetMotifMatchRegionMatchBeginMF_00449100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044993 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00449101 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044990, 1, (STRLEN(?templateMotifCigarP58301MF_0044990) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044990, CONCAT('^(?:-*[^-]){', STR(((791 - ?templateMotifSequenceMatchBeginPositionP5830191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044992, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044992) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044992, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044992) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0044993) - 1) AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_0044990, 1, (STRLEN(?templateMotifCigarP58301MF_0044990) - STRLEN(REPLACE(?templateMotifCigarP58301MF_0044990, CONCAT('^(?:-*[^-]){', STR(((796 - ?templateMotifSequenceMatchBeginPositionP5830191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_0044992, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044992) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_0044992, 1, (STRLEN(?targetMotifMatchCigarP58301MF_0044992) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_0044992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0044993) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs2t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('[FLIM][LIVFM]SGGE', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) . BIND(URI(CONCAT(STR(?this), '#MF_00449a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP58301112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP58301114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP58301MF_00449107 . ?templateMotifSequenceMatchRegionP58301112 faldo:begin ?templateMotifSequenceMatchBeginP58301113 . ?templateMotifSequenceMatchBeginP58301113 faldo:position ?templateMotifSequenceMatchBeginPositionP58301108 ; faldo:reference isoform:P58301-1 . ?templateMotifSequenceProfileAlignmentOperationP58301114 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00449118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP58301MF_00449109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00449117 . ?targetMotifMatchRegionMatchBeginMF_00449117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00449110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00449118 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_00449107, 1, (STRLEN(?templateMotifCigarP58301MF_00449107) - STRLEN(REPLACE(?templateMotifCigarP58301MF_00449107, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP58301108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_00449109, 1, (STRLEN(?targetMotifMatchCigarP58301MF_00449109) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_00449109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_00449109, 1, (STRLEN(?targetMotifMatchCigarP58301MF_00449109) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_00449109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00449110) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs2t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00449a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP58301127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP58301129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP58301MF_00449122 . ?templateMotifSequenceMatchRegionP58301127 faldo:begin ?templateMotifSequenceMatchBeginP58301128 . ?templateMotifSequenceMatchBeginP58301128 faldo:position ?templateMotifSequenceMatchBeginPositionP58301123 ; faldo:reference isoform:P58301-1 . ?templateMotifSequenceProfileAlignmentOperationP58301129 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00449133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP58301MF_00449124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00449132 . ?targetMotifMatchRegionMatchBeginMF_00449132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00449125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00449133 edam:has_input signature:MF_00449 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP58301MF_00449122, 1, (STRLEN(?templateMotifCigarP58301MF_00449122) - STRLEN(REPLACE(?templateMotifCigarP58301MF_00449122, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP58301123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP58301MF_00449124, 1, (STRLEN(?targetMotifMatchCigarP58301MF_00449124) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_00449124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP58301MF_00449124, 1, (STRLEN(?targetMotifMatchCigarP58301MF_00449124) - STRLEN(REPLACE(?targetMotifMatchCigarP58301MF_00449124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00449125) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs2t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00449a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag137) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag137, ?UNBOUND_VARIABLE) AS ?case4) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183963 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:183963 . })) . BIND(?this AS ?case6) . } OPTIONAL { ?this up:annotation ?samcc138 ; up:sequence ?thisSequence . ?samcc138 up:range ?samccr139 ; rdf:type up:Coiled_Coil_Annotation . ?samccr139 faldo:begin ?samccb140 ; faldo:end ?samcce141 . ?samccb140 faldo:position ?samccbp142 ; faldo:reference ?thisSequence . ?samcce141 faldo:position ?samccep143 ; faldo:reference ?thisSequence . BIND(?this AS ?sam48) . } BIND(URI(CONCAT(STR(?this), '#MF_00449a54')) AS ?keyword54) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00449 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00449#construct |