| http://purl.uniprot.org/unirules/MF_00470#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:188948 up:source unirule:MF_00470 .
_:188949 up:source unirule:MF_00470 .
_:188950 up:source unirule:MF_00470 .
_:188951 up:source unirule:MF_00470 .
_:188952 up:source unirule:MF_00470 .
_:188953 up:source unirule:MF_00470 .
_:188954 up:source unirule:MF_00470 .
_:188955 up:source unirule:MF_00470 .
_:188956 up:source unirule:MF_00470 .
_:188957 up:source unirule:MF_00470 .
_:188958 up:source unirule:MF_00470 .
_:188959 up:source unirule:MF_00470 .
_:188960 up:source unirule:MF_00470 .
_:188961 up:source unirule:MF_00470 .
_:188962 up:source unirule:MF_00470 .
_:188963 up:source unirule:MF_00470 .
_:188964 up:source unirule:MF_00470 .
_:188965 up:source unirule:MF_00470 .
_:188966 up:source unirule:MF_00470 .
_:188967 up:source unirule:MF_00470 .
_:188968 up:source unirule:MF_00470 .
_:188969 up:source unirule:MF_00470 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0016836 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.113' ;
up:fullName 'o-succinylbenzoate synthase' ;
up:shortName 'OSB synthase' ,
'OSBS' ;
rdf:type up:Structured_Name .
?name1 up:fullName "4-(2'-carboxyphenyl)-4-oxybutyric acid synthase" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'o-succinylbenzoic acid synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'menC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 4/7.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily.' .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case11 up:classifiedWith GO:0042372 .
?case12 up:classifiedWith GO:0009234 ,
keyword:474 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:18420 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:188970 a rdf:Statement ;
up:attribution _:188948 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:188971 a rdf:Statement ;
up:attribution _:188949 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:188972 a rdf:Statement ;
up:attribution _:188950 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:188973 a rdf:Statement ;
up:attribution _:188951 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:188974 a rdf:Statement ;
up:attribution _:188952 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:188975 a rdf:Statement ;
up:attribution _:188953 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:188976 a rdf:Statement ;
up:attribution _:188954 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:188977 a rdf:Statement ;
up:attribution _:188955 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:188978 a rdf:Statement ;
up:attribution _:188956 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:188979 a rdf:Statement ;
up:attribution _:188957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:188980 a rdf:Statement ;
up:attribution _:188958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:188981 a rdf:Statement ;
up:attribution _:188959 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:188982 a rdf:Statement ;
up:attribution _:188960 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:188983 a rdf:Statement ;
up:attribution _:188961 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:188984 a rdf:Statement ;
up:attribution _:188962 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042372 .
_:188985 a rdf:Statement ;
up:attribution _:188963 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:188986 a rdf:Statement ;
up:attribution _:188964 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:188987 a rdf:Statement ;
up:source unirule:MF_00470 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:188988 a rdf:Statement ;
up:attribution _:188965 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:188989 a rdf:Statement ;
up:source unirule:MF_00470 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:188990 a rdf:Statement ;
up:attribution _:188966 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:188991 a rdf:Statement ;
up:source unirule:MF_00470 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:188992 a rdf:Statement ;
up:attribution _:188967 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:188993 a rdf:Statement ;
up:source unirule:MF_00470 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:188994 a rdf:Statement ;
up:attribution _:188968 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:188995 a rdf:Statement ;
up:source unirule:MF_00470 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:188996 a rdf:Statement ;
up:attribution _:188969 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00470
#Rule MF_00470 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon44 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00470 .
?thisOrganism rdfs:subClassOf+ ?supertaxon44 .
BIND(URI(CONCAT(STR(?this), '#MF_00470a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP2920850 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2920852 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP29208MF_0047045 .
?templateMotifSequenceMatchRegionP2920850 faldo:begin ?templateMotifSequenceMatchBeginP2920851 .
?templateMotifSequenceMatchBeginP2920851 faldo:position ?templateMotifSequenceMatchBeginPositionP2920846 ;
faldo:reference isoform:P29208-1 .
?templateMotifSequenceProfileAlignmentOperationP2920852 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0047056 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP29208MF_0047047 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0047055 .
?targetMotifMatchRegionMatchBeginMF_0047055 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0047048 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0047056 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29208MF_0047045, 1, (STRLEN(?templateMotifCigarP29208MF_0047045) - STRLEN(REPLACE(?templateMotifCigarP29208MF_0047045, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP2920846) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0047048) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29208MF_0047045, 1, (STRLEN(?templateMotifCigarP29208MF_0047045) - STRLEN(REPLACE(?templateMotifCigarP29208MF_0047045, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP2920846) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0047048) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29208MF_0047045, 1, (STRLEN(?templateMotifCigarP29208MF_0047045) - STRLEN(REPLACE(?templateMotifCigarP29208MF_0047045, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP2920846) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29208MF_0047047, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047047) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047047, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0047048) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP2920871 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2920873 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP29208MF_0047066 .
?templateMotifSequenceMatchRegionP2920871 faldo:begin ?templateMotifSequenceMatchBeginP2920872 .
?templateMotifSequenceMatchBeginP2920872 faldo:position ?templateMotifSequenceMatchBeginPositionP2920867 ;
faldo:reference isoform:P29208-1 .
?templateMotifSequenceProfileAlignmentOperationP2920873 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0047077 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP29208MF_0047068 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0047076 .
?targetMotifMatchRegionMatchBeginMF_0047076 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0047069 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0047077 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29208MF_0047066, 1, (STRLEN(?templateMotifCigarP29208MF_0047066) - STRLEN(REPLACE(?templateMotifCigarP29208MF_0047066, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP2920867) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29208MF_0047068, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047068) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29208MF_0047068, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047068) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0047069) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP2920886 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2920888 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP29208MF_0047081 .
?templateMotifSequenceMatchRegionP2920886 faldo:begin ?templateMotifSequenceMatchBeginP2920887 .
?templateMotifSequenceMatchBeginP2920887 faldo:position ?templateMotifSequenceMatchBeginPositionP2920882 ;
faldo:reference isoform:P29208-1 .
?templateMotifSequenceProfileAlignmentOperationP2920888 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0047092 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP29208MF_0047083 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0047091 .
?targetMotifMatchRegionMatchBeginMF_0047091 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0047084 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0047092 edam:has_input signature:MF_00470 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29208MF_0047081, 1, (STRLEN(?templateMotifCigarP29208MF_0047081) - STRLEN(REPLACE(?templateMotifCigarP29208MF_0047081, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP2920882) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29208MF_0047083, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047083) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29208MF_0047083, 1, (STRLEN(?targetMotifMatchCigarP29208MF_0047083) - STRLEN(REPLACE(?targetMotifMatchCigarP29208MF_0047083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0047084) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00470a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag96) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag96, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
