| http://purl.uniprot.org/unirules/MF_00526#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:206218 up:source unirule:MF_00526 .
_:206219 up:source unirule:MF_00526 .
_:206220 up:source unirule:MF_00526 .
_:206221 up:source unirule:MF_00526 .
_:206222 up:source unirule:MF_00526 .
_:206223 up:source unirule:MF_00526 .
_:206224 up:source unirule:MF_00526 .
_:206225 up:source unirule:MF_00526 .
_:206226 up:source unirule:MF_00526 .
_:206227 up:source unirule:MF_00526 .
_:206228 up:source unirule:MF_00526 .
_:206229 up:source unirule:MF_00526 .
_:206230 up:source unirule:MF_00526 .
_:206231 up:source unirule:MF_00526 .
_:206232 up:source unirule:MF_00526 .
_:206233 up:source unirule:MF_00526 .
_:206234 up:source unirule:MF_00526 .
_:206235 up:source unirule:MF_00526 .
_:206236 up:source unirule:MF_00526 .
_:206237 up:source unirule:MF_00526 .
_:206238 up:source unirule:MF_00526 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0019553 ,
GO:0050097 ,
keyword:170 ,
keyword:413 ,
keyword:479 ,
keyword:846 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.99.1' ;
up:fullName 'Glutamate mutase sigma subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutamate mutase S chain' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glutamate mutase small subunit' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Methylaspartate mutase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'glmS' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18408 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-glutamate degradation via mesaconate pathway; acetate and pyruvate from L-glutamate: step 1/4.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of 2 epsilon subunits (GlmE) and 2 sigma subunits (GlmS). GlmE exists as a homodimer and GlmS as a monomer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methylaspartate mutase GlmS subunit family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:18408 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18408 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18408 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 up:ligandPart ?ligand37 ;
rdfs:subClassOf chebi:18408 ,
chebi:27638 .
_:206239 a rdf:Statement ;
up:attribution _:206218 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:206240 a rdf:Statement ;
up:attribution _:206219 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:206241 a rdf:Statement ;
up:attribution _:206220 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:206242 a rdf:Statement ;
up:attribution _:206221 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:206243 a rdf:Statement ;
up:attribution _:206222 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:206244 a rdf:Statement ;
up:attribution _:206223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:206245 a rdf:Statement ;
up:attribution _:206224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:206246 a rdf:Statement ;
up:attribution _:206225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:206247 a rdf:Statement ;
up:attribution _:206226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:206248 a rdf:Statement ;
up:attribution _:206227 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:206249 a rdf:Statement ;
up:attribution _:206228 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:206250 a rdf:Statement ;
up:attribution _:206229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:846 .
_:206251 a rdf:Statement ;
up:attribution _:206230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:206252 a rdf:Statement ;
up:attribution _:206231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:206253 a rdf:Statement ;
up:attribution _:206232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:206254 a rdf:Statement ;
up:attribution _:206233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050097 .
_:206255 a rdf:Statement ;
up:attribution _:206234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019553 .
_:206256 a rdf:Statement ;
up:source unirule:MF_00526 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:206257 a rdf:Statement ;
up:attribution _:206235 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:206258 a rdf:Statement ;
up:source unirule:MF_00526 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:206259 a rdf:Statement ;
up:attribution _:206236 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:206260 a rdf:Statement ;
up:source unirule:MF_00526 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:206261 a rdf:Statement ;
up:attribution _:206237 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:206262 a rdf:Statement ;
up:source unirule:MF_00526 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:206263 a rdf:Statement ;
up:attribution _:206238 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00526
#Rule MF_00526 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon40 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00526 .
?thisOrganism rdfs:subClassOf+ ?supertaxon40 .
BIND(URI(CONCAT(STR(?this), '#MF_00526a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP8007846 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP8007848 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80078MF_0052641 .
?templateMotifSequenceMatchRegionP8007846 faldo:begin ?templateMotifSequenceMatchBeginP8007847 .
?templateMotifSequenceMatchBeginP8007847 faldo:position ?templateMotifSequenceMatchBeginPositionP8007842 ;
faldo:reference isoform:P80078-1 .
?templateMotifSequenceProfileAlignmentOperationP8007848 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0052652 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80078MF_0052643 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0052651 .
?targetMotifMatchRegionMatchBeginMF_0052651 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0052644 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0052652 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052641, 1, (STRLEN(?templateMotifCigarP80078MF_0052641) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052641, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP8007842) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052643, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052643) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052643, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052643, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052643) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052643, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0052644) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052641, 1, (STRLEN(?templateMotifCigarP80078MF_0052641) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052641, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP8007842) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052643, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052643) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052643, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052643, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052643) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052643, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0052644) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('[SA]D[CVA]H[ATV]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP8007863 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP8007865 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80078MF_0052658 .
?templateMotifSequenceMatchRegionP8007863 faldo:begin ?templateMotifSequenceMatchBeginP8007864 .
?templateMotifSequenceMatchBeginP8007864 faldo:position ?templateMotifSequenceMatchBeginPositionP8007859 ;
faldo:reference isoform:P80078-1 .
?templateMotifSequenceProfileAlignmentOperationP8007865 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0052669 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80078MF_0052660 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0052668 .
?targetMotifMatchRegionMatchBeginMF_0052668 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0052661 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0052669 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052658, 1, (STRLEN(?templateMotifCigarP80078MF_0052658) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052658, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionP8007859) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052660, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052660) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052660, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052660) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0052661) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052658, 1, (STRLEN(?templateMotifCigarP80078MF_0052658) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052658, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP8007859) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052660, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052660) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052660, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052660) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0052661) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('SS[LI]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP8007880 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP8007882 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80078MF_0052675 .
?templateMotifSequenceMatchRegionP8007880 faldo:begin ?templateMotifSequenceMatchBeginP8007881 .
?templateMotifSequenceMatchBeginP8007881 faldo:position ?templateMotifSequenceMatchBeginPositionP8007876 ;
faldo:reference isoform:P80078-1 .
?templateMotifSequenceProfileAlignmentOperationP8007882 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0052686 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80078MF_0052677 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0052685 .
?targetMotifMatchRegionMatchBeginMF_0052685 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0052678 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0052686 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052675, 1, (STRLEN(?templateMotifCigarP80078MF_0052675) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052675, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP8007876) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052677, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052677) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052677, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052677) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0052678) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052675, 1, (STRLEN(?templateMotifCigarP80078MF_0052675) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052675, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP8007876) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052677, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052677) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052677, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052677) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0052678) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('N[LI][VGA][VI][G]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP8007897 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP8007899 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80078MF_0052692 .
?templateMotifSequenceMatchRegionP8007897 faldo:begin ?templateMotifSequenceMatchBeginP8007898 .
?templateMotifSequenceMatchBeginP8007898 faldo:position ?templateMotifSequenceMatchBeginPositionP8007893 ;
faldo:reference isoform:P80078-1 .
?templateMotifSequenceProfileAlignmentOperationP8007899 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00526103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80078MF_0052694 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00526102 .
?targetMotifMatchRegionMatchBeginMF_00526102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0052695 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00526103 edam:has_input signature:MF_00526 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80078MF_0052692, 1, (STRLEN(?templateMotifCigarP80078MF_0052692) - STRLEN(REPLACE(?templateMotifCigarP80078MF_0052692, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP8007893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80078MF_0052694, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052694) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052694, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80078MF_0052694, 1, (STRLEN(?targetMotifMatchCigarP80078MF_0052694) - STRLEN(REPLACE(?targetMotifMatchCigarP80078MF_0052694, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0052695) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00526a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
}
"xsd:string |
