| http://purl.uniprot.org/unirules/MF_00544#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:212110 up:source unirule:MF_00544 .
_:212111 up:source unirule:MF_00544 .
_:212112 up:source unirule:MF_00544 .
_:212113 up:source unirule:MF_00544 .
_:212114 up:source unirule:MF_00544 .
_:212115 up:source unirule:MF_00544 .
_:212116 up:source unirule:MF_00544 .
_:212117 up:source unirule:MF_00544 .
_:212118 up:source unirule:MF_00544 .
_:212119 up:source unirule:MF_00544 .
_:212120 up:source unirule:MF_00544 .
_:212121 up:source unirule:MF_00544 .
_:212122 up:source unirule:MF_00544 .
_:212123 up:source unirule:MF_00544 .
_:212124 up:source unirule:MF_00544 .
_:212125 up:source unirule:MF_00544 .
_:212126 up:source unirule:MF_00544 .
_:212127 up:source unirule:MF_00544 .
_:212128 up:source unirule:MF_00544 .
_:212129 up:source unirule:MF_00544 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0006569 ,
GO:0009034 ,
keyword:456 ,
keyword:663 ,
keyword:823 .
?gene0 skos:prefLabel 'tnaA' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-tryptophan degradation via pyruvate pathway; indole and pyruvate from L-tryptophan: step 1/1.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the beta-eliminating lyase family.' .
?case6 up:alternativeName ?name8 ;
up:recommendedName ?name7 .
?name7 up:ecName '4.1.99.1' ;
up:fullName 'Probable tryptophanase' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'L-tryptophan indole-lyase' ;
up:shortName 'TNase' ;
rdf:type up:Structured_Name .
?case9 up:alternativeName ?name11 ;
up:recommendedName ?name10 .
?name10 up:ecName '4.1.99.1' ;
up:fullName 'Tryptophanase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'L-tryptophan indole-lyase' ;
up:shortName 'TNase' ;
rdf:type up:Structured_Name .
?case12 up:classifiedWith keyword:7 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
_:212130 a rdf:Statement ;
up:attribution _:212110 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:212131 a rdf:Statement ;
up:attribution _:212111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:212132 a rdf:Statement ;
up:attribution _:212112 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:212133 a rdf:Statement ;
up:attribution _:212113 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:212134 a rdf:Statement ;
up:attribution _:212114 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:212135 a rdf:Statement ;
up:attribution _:212115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:212136 a rdf:Statement ;
up:attribution _:212116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:212137 a rdf:Statement ;
up:attribution _:212117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:823 .
_:212138 a rdf:Statement ;
up:attribution _:212118 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009034 .
_:212139 a rdf:Statement ;
up:attribution _:212119 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006569 .
_:212140 a rdf:Statement ;
up:attribution _:212120 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:212141 a rdf:Statement ;
up:attribution _:212121 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:212142 a rdf:Statement ;
up:attribution _:212122 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:212143 a rdf:Statement ;
up:attribution _:212123 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:212144 a rdf:Statement ;
up:attribution _:212124 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:212145 a rdf:Statement ;
up:source unirule:MF_00544 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:212146 a rdf:Statement ;
up:attribution _:212125 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:212147 a rdf:Statement ;
up:source unirule:MF_00544 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:212148 a rdf:Statement ;
up:attribution _:212126 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:212149 a rdf:Statement ;
up:source unirule:MF_00544 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:212150 a rdf:Statement ;
up:attribution _:212127 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:212151 a rdf:Statement ;
up:source unirule:MF_00544 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:212152 a rdf:Statement ;
up:attribution _:212128 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:212153 a rdf:Statement ;
up:source unirule:MF_00544 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:212154 a rdf:Statement ;
up:attribution _:212129 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00544
#Rule MF_00544 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-13
VALUES ?supertaxon43 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00544 .
?thisOrganism rdfs:subClassOf+ ?supertaxon43 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_00543 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP0A85350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A85352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A853MF_0054445 .
?templateMotifSequenceMatchRegionP0A85350 faldo:begin ?templateMotifSequenceMatchBeginP0A85351 .
?templateMotifSequenceMatchBeginP0A85351 faldo:position ?templateMotifSequenceMatchBeginPositionP0A85346 ;
faldo:reference isoform:P0A853-1 .
?templateMotifSequenceProfileAlignmentOperationP0A85352 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A853MF_0054447 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054455 .
?targetMotifMatchRegionMatchBeginMF_0054455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054456 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
VALUES ?supertaxon44 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon44 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A853MF_0054445, 1, (STRLEN(?templateMotifCigarP0A853MF_0054445) - STRLEN(REPLACE(?templateMotifCigarP0A853MF_0054445, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0A85346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A853MF_0054447, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054447) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A853MF_0054447, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054447) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0054448) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP0A85366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A85368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A853MF_0054461 .
?templateMotifSequenceMatchRegionP0A85366 faldo:begin ?templateMotifSequenceMatchBeginP0A85367 .
?templateMotifSequenceMatchBeginP0A85367 faldo:position ?templateMotifSequenceMatchBeginPositionP0A85362 ;
faldo:reference isoform:P0A853-1 .
?templateMotifSequenceProfileAlignmentOperationP0A85368 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054472 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A853MF_0054463 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054471 .
?targetMotifMatchRegionMatchBeginMF_0054471 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054464 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054472 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_3) .
VALUES ?supertaxon60 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon60 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A853MF_0054461, 1, (STRLEN(?templateMotifCigarP0A853MF_0054461) - STRLEN(REPLACE(?templateMotifCigarP0A853MF_0054461, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP0A85362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A853MF_0054463, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054463) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A853MF_0054463, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054463) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0054464) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs2t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0A85382 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A85384 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A853MF_0054477 .
?templateMotifSequenceMatchRegionP0A85382 faldo:begin ?templateMotifSequenceMatchBeginP0A85383 .
?templateMotifSequenceMatchBeginP0A85383 faldo:position ?templateMotifSequenceMatchBeginPositionP0A85378 ;
faldo:reference isoform:P0A853-1 .
?templateMotifSequenceProfileAlignmentOperationP0A85384 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054488 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A853MF_0054479 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054487 .
?targetMotifMatchRegionMatchBeginMF_0054487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054480 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054488 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
VALUES ?supertaxon76 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon76 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A853MF_0054477, 1, (STRLEN(?templateMotifCigarP0A853MF_0054477) - STRLEN(REPLACE(?templateMotifCigarP0A853MF_0054477, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP0A85378) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A853MF_0054479, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054479) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A853MF_0054479, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054479) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0054480) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs3t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0A85398 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A853100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A853MF_0054493 .
?templateMotifSequenceMatchRegionP0A85398 faldo:begin ?templateMotifSequenceMatchBeginP0A85399 .
?templateMotifSequenceMatchBeginP0A85399 faldo:position ?templateMotifSequenceMatchBeginPositionP0A85394 ;
faldo:reference isoform:P0A853-1 .
?templateMotifSequenceProfileAlignmentOperationP0A853100 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00544104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A853MF_0054495 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00544103 .
?targetMotifMatchRegionMatchBeginMF_00544103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054496 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00544104 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_5) .
VALUES ?supertaxon92 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon92 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A853MF_0054493, 1, (STRLEN(?templateMotifCigarP0A853MF_0054493) - STRLEN(REPLACE(?templateMotifCigarP0A853MF_0054493, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP0A85394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A853MF_0054495, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054495) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A853MF_0054495, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_0054495) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_0054495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0054496) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs4t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP0A853113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A853115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A853MF_00544108 .
?templateMotifSequenceMatchRegionP0A853113 faldo:begin ?templateMotifSequenceMatchBeginP0A853114 .
?templateMotifSequenceMatchBeginP0A853114 faldo:position ?templateMotifSequenceMatchBeginPositionP0A853109 ;
faldo:reference isoform:P0A853-1 .
?templateMotifSequenceProfileAlignmentOperationP0A853115 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00544119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A853MF_00544110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00544118 .
?targetMotifMatchRegionMatchBeginMF_00544118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00544111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00544119 edam:has_input signature:MF_00544 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A853MF_00544108, 1, (STRLEN(?templateMotifCigarP0A853MF_00544108) - STRLEN(REPLACE(?templateMotifCigarP0A853MF_00544108, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP0A853109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A853MF_00544110, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_00544110) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_00544110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A853MF_00544110, 1, (STRLEN(?targetMotifMatchCigarP0A853MF_00544110) - STRLEN(REPLACE(?targetMotifMatchCigarP0A853MF_00544110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00544111) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs5t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_00544a11')) AS ?name11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag123) .
}
BIND(IF((BOUND(?tagFT_2) || BOUND(?tagFT_3) || BOUND(?tagFT_4) || BOUND(?tagFT_5)), ?caseWithTag123, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
