| http://purl.uniprot.org/unirules/MF_00704#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:261258 up:source unirule:MF_00704 .
_:261259 up:source unirule:MF_00704 .
_:261260 up:source unirule:MF_00704 .
_:261261 up:source unirule:MF_00704 .
_:261262 up:source unirule:MF_00704 .
_:261263 up:source unirule:MF_00704 .
_:261264 up:source unirule:MF_00704 .
_:261265 up:source unirule:MF_00704 .
_:261266 up:source unirule:MF_00704 .
_:261267 up:source unirule:MF_00704 .
_:261268 up:source unirule:MF_00704 .
_:261269 up:source unirule:MF_00704 .
_:261270 up:source unirule:MF_00704 .
_:261271 up:source unirule:MF_00704 .
_:261272 up:source unirule:MF_00704 .
_:261273 up:source unirule:MF_00704 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0019807 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.15' ;
up:fullName 'Probable aspartoacylase' ;
rdf:type up:Structured_Name .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the AspA/AstE family. Aspartoacylase subfamily.' .
?case5 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs6 up:annotation ?annotation7 ,
?annotation13 ,
?annotation19 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:29105 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29105 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:29105 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf ?molecule30 .
?molecule30 rdfs:label 'substrate' .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf ?molecule38 .
?molecule38 rdfs:label 'substrate' .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf ?molecule46 .
?molecule46 rdfs:label 'substrate' .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
_:261274 a rdf:Statement ;
up:attribution _:261258 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:261275 a rdf:Statement ;
up:attribution _:261259 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:261276 a rdf:Statement ;
up:attribution _:261260 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:261277 a rdf:Statement ;
up:attribution _:261261 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:261278 a rdf:Statement ;
up:attribution _:261262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:261279 a rdf:Statement ;
up:attribution _:261263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019807 .
_:261280 a rdf:Statement ;
up:attribution _:261264 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:261281 a rdf:Statement ;
up:attribution _:261265 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:261282 a rdf:Statement ;
up:attribution _:261266 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:261283 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:261284 a rdf:Statement ;
up:attribution _:261267 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:261285 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:261286 a rdf:Statement ;
up:attribution _:261268 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:261287 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:261288 a rdf:Statement ;
up:attribution _:261269 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:261289 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:261290 a rdf:Statement ;
up:attribution _:261270 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:261291 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:261292 a rdf:Statement ;
up:attribution _:261271 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:261293 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:261294 a rdf:Statement ;
up:attribution _:261272 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:261295 a rdf:Statement ;
up:source unirule:MF_00704 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:261296 a rdf:Statement ;
up:attribution _:261273 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00704
#Rule MF_00704 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00704 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(URI(CONCAT(STR(?this), '#MF_00704a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ8YQC162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YQC164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YQC1MF_0070457 .
?templateMotifSequenceMatchRegionQ8YQC162 faldo:begin ?templateMotifSequenceMatchBeginQ8YQC163 .
?templateMotifSequenceMatchBeginQ8YQC163 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YQC158 ;
faldo:reference isoform:Q8YQC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YQC164 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0070468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YQC1MF_0070459 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0070467 .
?targetMotifMatchRegionMatchBeginMF_0070467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0070460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0070468 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070457, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070457) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070457, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionQ8YQC158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0070460) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070457, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070457) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070457, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ8YQC158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0070460) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070457, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070457) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070457, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionQ8YQC158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070459, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070459) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0070460) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionQ8YQC183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YQC185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YQC1MF_0070478 .
?templateMotifSequenceMatchRegionQ8YQC183 faldo:begin ?templateMotifSequenceMatchBeginQ8YQC184 .
?templateMotifSequenceMatchBeginQ8YQC184 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YQC179 ;
faldo:reference isoform:Q8YQC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YQC185 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0070489 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YQC1MF_0070480 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0070488 .
?targetMotifMatchRegionMatchBeginMF_0070488 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0070481 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0070489 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070478, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070478) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070478, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ8YQC179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070480, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070480) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070480, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070480) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0070481) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070478, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070478) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070478, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ8YQC179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070480, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070480) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070480, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070480) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0070481) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)) = 'NR')) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ8YQC1100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YQC1102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YQC1MF_0070495 .
?templateMotifSequenceMatchRegionQ8YQC1100 faldo:begin ?templateMotifSequenceMatchBeginQ8YQC1101 .
?templateMotifSequenceMatchBeginQ8YQC1101 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YQC196 ;
faldo:reference isoform:Q8YQC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YQC1102 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00704106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YQC1MF_0070497 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00704105 .
?targetMotifMatchRegionMatchBeginMF_00704105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0070498 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00704106 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_0070495, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_0070495) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_0070495, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ8YQC196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070497, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070497) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_0070497, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_0070497) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_0070497, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0070498) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ8YQC1115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YQC1117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YQC1MF_00704110 .
?templateMotifSequenceMatchRegionQ8YQC1115 faldo:begin ?templateMotifSequenceMatchBeginQ8YQC1116 .
?templateMotifSequenceMatchBeginQ8YQC1116 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YQC1111 ;
faldo:reference isoform:Q8YQC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YQC1117 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00704121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YQC1MF_00704112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00704120 .
?targetMotifMatchRegionMatchBeginMF_00704120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00704113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00704121 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_00704110, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_00704110) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_00704110, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ8YQC1111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_00704112, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_00704112) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_00704112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_00704112, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_00704112) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_00704112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00704113) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ8YQC1130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YQC1132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YQC1MF_00704125 .
?templateMotifSequenceMatchRegionQ8YQC1130 faldo:begin ?templateMotifSequenceMatchBeginQ8YQC1131 .
?templateMotifSequenceMatchBeginQ8YQC1131 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YQC1126 ;
faldo:reference isoform:Q8YQC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YQC1132 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00704136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YQC1MF_00704127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00704135 .
?targetMotifMatchRegionMatchBeginMF_00704135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00704128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00704136 edam:has_input signature:MF_00704 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YQC1MF_00704125, 1, (STRLEN(?templateMotifCigarQ8YQC1MF_00704125) - STRLEN(REPLACE(?templateMotifCigarQ8YQC1MF_00704125, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionQ8YQC1126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_00704127, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_00704127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_00704127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YQC1MF_00704127, 1, (STRLEN(?targetMotifMatchCigarQ8YQC1MF_00704127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YQC1MF_00704127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00704128) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00704a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag140) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag140, ?UNBOUND_VARIABLE) AS ?case5) .
}
"xsd:string |
