| http://purl.uniprot.org/unirules/MF_00757#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:276593 up:source unirule:MF_00757 .
_:276594 up:source unirule:MF_00757 .
_:276595 up:source unirule:MF_00757 .
_:276596 up:source unirule:MF_00757 .
_:276597 up:source unirule:MF_00757 .
_:276598 up:source unirule:MF_00757 .
_:276599 up:source unirule:MF_00757 .
_:276600 up:source unirule:MF_00757 .
_:276601 up:source unirule:MF_00757 .
_:276602 up:source unirule:MF_00757 .
_:276603 up:source unirule:MF_00757 .
_:276604 up:source unirule:MF_00757 .
_:276605 up:source unirule:MF_00757 .
_:276606 up:source unirule:MF_00757 .
_:276607 up:source unirule:MF_00757 .
_:276608 up:source unirule:MF_00757 .
_:276609 up:source unirule:MF_00757 .
_:276610 up:source unirule:MF_00757 .
_:276611 up:source unirule:MF_00757 .
_:276612 up:source unirule:MF_00757 .
_:276613 up:source unirule:MF_00757 .
_:276614 up:source unirule:MF_00757 .
_:276615 up:source unirule:MF_00757 .
_:276616 up:source unirule:MF_00757 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0001682 ,
GO:0004526 ,
GO:0005737 ,
GO:0030677 ,
keyword:255 ,
keyword:378 ,
keyword:540 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.26.5' ;
up:fullName 'Ribonuclease P protein component 4' ;
up:shortName 'RNase P component 4' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Rpp21' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rnp4' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Consists of a catalytic RNA component and at least 4-5 protein subunits.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eukaryotic/archaeal RNase P protein component 4 family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
_:276617 a rdf:Statement ;
up:attribution _:276593 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:276618 a rdf:Statement ;
up:attribution _:276594 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:276619 a rdf:Statement ;
up:attribution _:276595 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:276620 a rdf:Statement ;
up:attribution _:276596 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:276621 a rdf:Statement ;
up:attribution _:276597 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:276622 a rdf:Statement ;
up:attribution _:276598 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:276623 a rdf:Statement ;
up:attribution _:276599 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:276624 a rdf:Statement ;
up:attribution _:276600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:276625 a rdf:Statement ;
up:attribution _:276601 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:276626 a rdf:Statement ;
up:attribution _:276602 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:276627 a rdf:Statement ;
up:attribution _:276603 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:276628 a rdf:Statement ;
up:attribution _:276604 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:276629 a rdf:Statement ;
up:attribution _:276605 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:276630 a rdf:Statement ;
up:attribution _:276606 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004526 .
_:276631 a rdf:Statement ;
up:attribution _:276607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001682 .
_:276632 a rdf:Statement ;
up:attribution _:276608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030677 .
_:276633 a rdf:Statement ;
up:attribution _:276609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:276634 a rdf:Statement ;
up:attribution _:276610 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:276635 a rdf:Statement ;
up:attribution _:276611 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:276636 a rdf:Statement ;
up:attribution _:276612 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:276637 a rdf:Statement ;
up:source unirule:MF_00757 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:276638 a rdf:Statement ;
up:attribution _:276613 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:276639 a rdf:Statement ;
up:source unirule:MF_00757 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:276640 a rdf:Statement ;
up:attribution _:276614 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:276641 a rdf:Statement ;
up:source unirule:MF_00757 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:276642 a rdf:Statement ;
up:attribution _:276615 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:276643 a rdf:Statement ;
up:source unirule:MF_00757 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:276644 a rdf:Statement ;
up:attribution _:276616 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00757
#Rule MF_00757 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00757 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00757a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00757a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionO5924841 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5924843 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59248MF_0075736 .
?templateMotifSequenceMatchRegionO5924841 faldo:begin ?templateMotifSequenceMatchBeginO5924842 .
?templateMotifSequenceMatchBeginO5924842 faldo:position ?templateMotifSequenceMatchBeginPositionO5924837 ;
faldo:reference isoform:O59248-1 .
?templateMotifSequenceProfileAlignmentOperationO5924843 edam:has_input signature:MF_00757 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0075747 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59248MF_0075738 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0075746 .
?targetMotifMatchRegionMatchBeginMF_0075746 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0075739 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0075747 edam:has_input signature:MF_00757 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59248MF_0075736, 1, (STRLEN(?templateMotifCigarO59248MF_0075736) - STRLEN(REPLACE(?templateMotifCigarO59248MF_0075736, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionO5924837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0075739) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59248MF_0075736, 1, (STRLEN(?templateMotifCigarO59248MF_0075736) - STRLEN(REPLACE(?templateMotifCigarO59248MF_0075736, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO5924837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0075739) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59248MF_0075736, 1, (STRLEN(?templateMotifCigarO59248MF_0075736) - STRLEN(REPLACE(?templateMotifCigarO59248MF_0075736, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO5924837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0075739) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59248MF_0075736, 1, (STRLEN(?templateMotifCigarO59248MF_0075736) - STRLEN(REPLACE(?templateMotifCigarO59248MF_0075736, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionO5924837) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59248MF_0075738, 1, (STRLEN(?targetMotifMatchCigarO59248MF_0075738) - STRLEN(REPLACE(?targetMotifMatchCigarO59248MF_0075738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0075739) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag60) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag60, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
