| http://purl.uniprot.org/unirules/MF_00776#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:280510 up:source unirule:MF_00776 .
_:280511 up:source unirule:MF_00776 .
_:280512 up:source unirule:MF_00776 .
_:280513 up:source unirule:MF_00776 .
_:280514 up:source unirule:MF_00776 .
_:280515 up:source unirule:MF_00776 .
_:280516 up:source unirule:MF_00776 .
_:280517 up:source unirule:MF_00776 .
_:280518 up:source unirule:MF_00776 .
_:280519 up:source unirule:MF_00776 .
_:280520 up:source unirule:MF_00776 .
_:280521 up:source unirule:MF_00776 .
_:280522 up:source unirule:MF_00776 .
_:280523 up:source unirule:MF_00776 .
_:280524 up:source unirule:MF_00776 .
_:280525 up:source unirule:MF_00776 .
_:280526 up:source unirule:MF_00776 .
_:280527 up:source unirule:MF_00776 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0047964 ,
keyword:520 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.26' ;
up:fullName 'Glyoxylate reductase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gyaR' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GyaR subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:58349 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58349 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:58349 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:58349 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Active_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
_:280528 a rdf:Statement ;
up:attribution _:280510 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:280529 a rdf:Statement ;
up:attribution _:280511 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:280530 a rdf:Statement ;
up:attribution _:280512 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:280531 a rdf:Statement ;
up:attribution _:280513 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:280532 a rdf:Statement ;
up:attribution _:280514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:280533 a rdf:Statement ;
up:attribution _:280515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:280534 a rdf:Statement ;
up:attribution _:280516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:280535 a rdf:Statement ;
up:attribution _:280517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:280536 a rdf:Statement ;
up:attribution _:280518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:280537 a rdf:Statement ;
up:attribution _:280519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047964 .
_:280538 a rdf:Statement ;
up:attribution _:280520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:280539 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:280540 a rdf:Statement ;
up:attribution _:280521 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:280541 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:280542 a rdf:Statement ;
up:attribution _:280522 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:280543 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:280544 a rdf:Statement ;
up:attribution _:280523 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:280545 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:280546 a rdf:Statement ;
up:attribution _:280524 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:280547 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:280548 a rdf:Statement ;
up:attribution _:280525 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:280549 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:280550 a rdf:Statement ;
up:attribution _:280526 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:280551 a rdf:Statement ;
up:source unirule:MF_00776 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:280552 a rdf:Statement ;
up:attribution _:280527 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00776
#Rule MF_00776 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00776 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00776a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionQ9C4M559 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M561 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_0077654 .
?templateMotifSequenceMatchRegionQ9C4M559 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M560 .
?templateMotifSequenceMatchBeginQ9C4M560 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M555 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M561 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0077665 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_0077656 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0077664 .
?targetMotifMatchRegionMatchBeginMF_0077664 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0077657 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0077665 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077654, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077654) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077654, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ9C4M555) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077656, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077656) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077656, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077656) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0077657) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077654, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077654) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077654, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ9C4M555) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077656, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077656) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077656, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077656) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0077657) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[FLM]GRI', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ9C4M576 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M578 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_0077671 .
?templateMotifSequenceMatchRegionQ9C4M576 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M577 .
?templateMotifSequenceMatchBeginQ9C4M577 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M572 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M578 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0077682 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_0077673 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0077681 .
?targetMotifMatchRegionMatchBeginMF_0077681 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0077674 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0077682 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077671, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077671) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077671, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionQ9C4M572) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077673, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077673) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077673, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077673) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0077674) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077671, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077671) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077671, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionQ9C4M572) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077673, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077673) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077673, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077673) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0077674) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('SR[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ9C4M593 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M595 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_0077688 .
?templateMotifSequenceMatchRegionQ9C4M593 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M594 .
?templateMotifSequenceMatchBeginQ9C4M594 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M589 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M595 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0077699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_0077690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0077698 .
?targetMotifMatchRegionMatchBeginMF_0077698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0077691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0077699 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077688, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077688) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077688, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionQ9C4M589) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077690, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077690) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077690, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077690) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0077691) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_0077688, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_0077688) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_0077688, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ9C4M589) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077690, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077690) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_0077690, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_0077690) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_0077690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0077691) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[ITV][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ9C4M5110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M5112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_00776105 .
?templateMotifSequenceMatchRegionQ9C4M5110 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M5111 .
?templateMotifSequenceMatchBeginQ9C4M5111 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M5106 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M5112 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00776116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_00776107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00776115 .
?targetMotifMatchRegionMatchBeginMF_00776115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00776108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00776116 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_00776105, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_00776105) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_00776105, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ9C4M5106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776107, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776107, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00776108) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_00776105, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_00776105) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_00776105, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionQ9C4M5106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776107, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776107, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00776108) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][AG]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ9C4M5127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M5129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_00776122 .
?templateMotifSequenceMatchRegionQ9C4M5127 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M5128 .
?templateMotifSequenceMatchBeginQ9C4M5128 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M5123 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M5129 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00776133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_00776124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00776132 .
?targetMotifMatchRegionMatchBeginMF_00776132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00776125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00776133 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_00776122, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_00776122) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_00776122, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ9C4M5123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776124, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776124, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00776125) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ9C4M5142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M5144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_00776137 .
?templateMotifSequenceMatchRegionQ9C4M5142 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M5143 .
?templateMotifSequenceMatchBeginQ9C4M5143 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M5138 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M5144 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00776148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_00776139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00776147 .
?targetMotifMatchRegionMatchBeginMF_00776147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00776140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00776148 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_00776137, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_00776137) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_00776137, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionQ9C4M5138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776139, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776139) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776139, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776139) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00776140) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ9C4M5157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9C4M5159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9C4M5MF_00776152 .
?templateMotifSequenceMatchRegionQ9C4M5157 faldo:begin ?templateMotifSequenceMatchBeginQ9C4M5158 .
?templateMotifSequenceMatchBeginQ9C4M5158 faldo:position ?templateMotifSequenceMatchBeginPositionQ9C4M5153 ;
faldo:reference isoform:Q9C4M5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9C4M5159 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00776163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9C4M5MF_00776154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00776162 .
?targetMotifMatchRegionMatchBeginMF_00776162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00776155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00776163 edam:has_input signature:MF_00776 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9C4M5MF_00776152, 1, (STRLEN(?templateMotifCigarQ9C4M5MF_00776152) - STRLEN(REPLACE(?templateMotifCigarQ9C4M5MF_00776152, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ9C4M5153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776154, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9C4M5MF_00776154, 1, (STRLEN(?targetMotifMatchCigarQ9C4M5MF_00776154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9C4M5MF_00776154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00776155) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00776a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
}
"xsd:string |
