Results
Your Query
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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00837#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00837#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00837#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00837#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00837#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:297185 up:source unirule:MF_00837 .
_:297186 up:source unirule:MF_00837 .
_:297187 up:source unirule:MF_00837 .
_:297188 up:source unirule:MF_00837 .
_:297189 up:source unirule:MF_00837 .
_:297190 up:source unirule:MF_00837 .
_:297191 up:source unirule:MF_00837 .
_:297192 up:source unirule:MF_00837 .
_:297193 up:source unirule:MF_00837 .
_:297194 up:source unirule:MF_00837 .
_:297195 up:source unirule:MF_00837 .
_:297196 up:source unirule:MF_00837 .
_:297197 up:source unirule:MF_00837 .
_:297198 up:source unirule:MF_00837 .
_:297199 up:source unirule:MF_00837 .
_:297200 up:source unirule:MF_00837 .
_:297201 up:source unirule:MF_00837 .
_:297202 up:source unirule:MF_00837 .
_:297203 up:source unirule:MF_00837 .
_:297204 up:source unirule:MF_00837 .
_:297205 up:source unirule:MF_00837 .
?this up:alternativeName ?name0 ;
up:annotation ?annotation2 ,
?annotation3 ;
up:classifiedWith GO:0009245 ,
keyword:12 ,
keyword:472 ,
keyword:732 ,
keyword:808 ,
keyword:998 ;
up:precursor "true"^^xsd:boolean .
?name0 up:fullName 'Lipid A acylation protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pagP' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the lipid A palmitoyltransferase family.' .
?case5 up:classifiedWith GO:0016416 ;
up:recommendedName ?name6 .
?name6 up:ecName '2.3.1.251' ;
up:fullName 'Lipid A palmitoyltransferase PagP' ;
rdf:type up:Structured_Name .
?case8 up:classifiedWith GO:0016746 ;
up:recommendedName ?name9 .
?name9 up:ecName '2.3.1.251' ;
up:fullName 'Lipid A acyltransferase PagP' ;
rdf:type up:Structured_Name .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Role in lipopolysaccharide recognition' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Role in the phospholipid gating' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?sam40 up:classifiedWith keyword:732 .
?signal41 faldo:begin ?signalb42 ;
faldo:end ?signale43 .
?signalb42 faldo:position ?signalbp44 .
?signale43 faldo:position ?signalep45 .
?keyword46 up:range ?signal41 .
_:297206 a rdf:Statement ;
up:attribution _:297185 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name0 .
_:297207 a rdf:Statement ;
up:attribution _:297186 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:297208 a rdf:Statement ;
up:attribution _:297187 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:297209 a rdf:Statement ;
up:attribution _:297188 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:297210 a rdf:Statement ;
up:attribution _:297189 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:297211 a rdf:Statement ;
up:attribution _:297190 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:297212 a rdf:Statement ;
up:attribution _:297191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:297213 a rdf:Statement ;
up:attribution _:297192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:297214 a rdf:Statement ;
up:attribution _:297193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:297215 a rdf:Statement ;
up:attribution _:297194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:297216 a rdf:Statement ;
up:attribution _:297195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009245 .
_:297217 a rdf:Statement ;
up:attribution _:297196 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:297218 a rdf:Statement ;
up:attribution _:297197 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016416 .
_:297219 a rdf:Statement ;
up:attribution _:297198 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:297220 a rdf:Statement ;
up:attribution _:297199 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016746 .
_:297221 a rdf:Statement ;
up:source unirule:MF_00837 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:297222 a rdf:Statement ;
up:attribution _:297200 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:297223 a rdf:Statement ;
up:source unirule:MF_00837 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:297224 a rdf:Statement ;
up:attribution _:297201 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:297225 a rdf:Statement ;
up:source unirule:MF_00837 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:297226 a rdf:Statement ;
up:attribution _:297202 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:297227 a rdf:Statement ;
up:source unirule:MF_00837 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:297228 a rdf:Statement ;
up:attribution _:297203 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:297229 a rdf:Statement ;
up:source unirule:MF_00837 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:297230 a rdf:Statement ;
up:attribution _:297204 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:297231 a rdf:Statement ;
up:attribution _:297205 ;
rdf:subject ?sam40 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00837
#Rule MF_00837 Created by:? on:2011-10-26 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00837 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00837a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP3700152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3700154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37001MF_0083747 .
?templateMotifSequenceMatchRegionP3700152 faldo:begin ?templateMotifSequenceMatchBeginP3700153 .
?templateMotifSequenceMatchBeginP3700153 faldo:position ?templateMotifSequenceMatchBeginPositionP3700148 ;
faldo:reference isoform:P37001-1 .
?templateMotifSequenceProfileAlignmentOperationP3700154 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083758 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37001MF_0083749 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083757 .
?targetMotifMatchRegionMatchBeginMF_0083757 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083750 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083758 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37001MF_0083747, 1, (STRLEN(?templateMotifCigarP37001MF_0083747) - STRLEN(REPLACE(?templateMotifCigarP37001MF_0083747, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP3700148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37001MF_0083749, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083749) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37001MF_0083749, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083749) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0083750) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP3700167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3700169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37001MF_0083762 .
?templateMotifSequenceMatchRegionP3700167 faldo:begin ?templateMotifSequenceMatchBeginP3700168 .
?templateMotifSequenceMatchBeginP3700168 faldo:position ?templateMotifSequenceMatchBeginPositionP3700163 ;
faldo:reference isoform:P37001-1 .
?templateMotifSequenceProfileAlignmentOperationP3700169 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083773 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37001MF_0083764 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083772 .
?targetMotifMatchRegionMatchBeginMF_0083772 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083765 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083773 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37001MF_0083762, 1, (STRLEN(?templateMotifCigarP37001MF_0083762) - STRLEN(REPLACE(?templateMotifCigarP37001MF_0083762, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP3700163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37001MF_0083764, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083764) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37001MF_0083764, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083764) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0083765) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP3700182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3700184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37001MF_0083777 .
?templateMotifSequenceMatchRegionP3700182 faldo:begin ?templateMotifSequenceMatchBeginP3700183 .
?templateMotifSequenceMatchBeginP3700183 faldo:position ?templateMotifSequenceMatchBeginPositionP3700178 ;
faldo:reference isoform:P37001-1 .
?templateMotifSequenceProfileAlignmentOperationP3700184 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083788 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37001MF_0083779 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083787 .
?targetMotifMatchRegionMatchBeginMF_0083787 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083780 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083788 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37001MF_0083777, 1, (STRLEN(?templateMotifCigarP37001MF_0083777) - STRLEN(REPLACE(?templateMotifCigarP37001MF_0083777, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP3700178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37001MF_0083779, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083779) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37001MF_0083779, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083779) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0083780) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP3700197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3700199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37001MF_0083792 .
?templateMotifSequenceMatchRegionP3700197 faldo:begin ?templateMotifSequenceMatchBeginP3700198 .
?templateMotifSequenceMatchBeginP3700198 faldo:position ?templateMotifSequenceMatchBeginPositionP3700193 ;
faldo:reference isoform:P37001-1 .
?templateMotifSequenceProfileAlignmentOperationP3700199 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00837103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37001MF_0083794 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00837102 .
?targetMotifMatchRegionMatchBeginMF_00837102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083795 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00837103 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37001MF_0083792, 1, (STRLEN(?templateMotifCigarP37001MF_0083792) - STRLEN(REPLACE(?templateMotifCigarP37001MF_0083792, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP3700193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37001MF_0083794, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083794) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37001MF_0083794, 1, (STRLEN(?targetMotifMatchCigarP37001MF_0083794) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_0083794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0083795) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP37001112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37001114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37001MF_00837107 .
?templateMotifSequenceMatchRegionP37001112 faldo:begin ?templateMotifSequenceMatchBeginP37001113 .
?templateMotifSequenceMatchBeginP37001113 faldo:position ?templateMotifSequenceMatchBeginPositionP37001108 ;
faldo:reference isoform:P37001-1 .
?templateMotifSequenceProfileAlignmentOperationP37001114 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00837118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37001MF_00837109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00837117 .
?targetMotifMatchRegionMatchBeginMF_00837117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00837110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00837118 edam:has_input signature:MF_00837 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37001MF_00837107, 1, (STRLEN(?templateMotifCigarP37001MF_00837107) - STRLEN(REPLACE(?templateMotifCigarP37001MF_00837107, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP37001108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37001MF_00837109, 1, (STRLEN(?targetMotifMatchCigarP37001MF_00837109) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_00837109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37001MF_00837109, 1, (STRLEN(?targetMotifMatchCigarP37001MF_00837109) - STRLEN(REPLACE(?targetMotifMatchCigarP37001MF_00837109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00837110) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00837a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso |
| http://purl.uniprot.org/unirules/MF_00837 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00837#construct |