| http://purl.uniprot.org/unirules/MF_00843#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:299692 up:source unirule:MF_00843 .
_:299693 up:source unirule:MF_00843 .
_:299694 up:source unirule:MF_00843 .
_:299695 up:source unirule:MF_00843 .
_:299696 up:source unirule:MF_00843 .
_:299697 up:source unirule:MF_00843 .
_:299698 up:source unirule:MF_00843 .
_:299699 up:source unirule:MF_00843 .
_:299700 up:source unirule:MF_00843 .
_:299701 up:source unirule:MF_00843 .
_:299702 up:source unirule:MF_00843 .
_:299703 up:source unirule:MF_00843 .
_:299704 up:source unirule:MF_00843 .
_:299705 up:source unirule:MF_00843 .
_:299706 up:source unirule:MF_00843 .
_:299707 up:source unirule:MF_00843 .
_:299708 up:source unirule:MF_00843 .
_:299709 up:source unirule:MF_00843 .
_:299710 up:source unirule:MF_00843 .
_:299711 up:source unirule:MF_00843 .
_:299712 up:source unirule:MF_00843 .
_:299713 up:source unirule:MF_00843 .
_:299714 up:source unirule:MF_00843 .
_:299715 up:source unirule:MF_00843 .
_:299716 up:source unirule:MF_00843 .
_:299717 up:source unirule:MF_00843 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation7 ;
up:classifiedWith GO:0008289 ,
GO:0009279 ,
GO:0030258 ,
GO:0042834 ,
GO:0043580 ,
keyword:134 ,
keyword:449 ,
keyword:472 ,
keyword:564 ,
keyword:572 ,
keyword:677 ,
keyword:964 ,
keyword:998 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Major outer membrane lipoprotein Lpp' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'lpp' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'A highly abundant outer membrane lipoprotein that controls the distance between the inner and outer membranes. The only protein known to be covalently linked to the peptidoglycan network (PGN). Also non-covalently binds the PGN. The link between the cell outer membrane and PGN contributes to maintenance of the structural and functional integrity of the cell envelope, and maintains the correct distance between the PGN and the outer membrane.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Attached via its lipidated N-terminus to the inner leaflet of the outer membrane. Attached to the peptidoglycan network (PGN) via its C-terminus' .
?annotation4li5 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation4li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Lpp family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Repeat_Annotation .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Repeat_Annotation .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-murein peptidoglycan lysine' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'N-palmitoyl cysteine' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'S-diacylglycerol cysteine' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?sam40 up:classifiedWith keyword:175 .
?coiledCoil41 faldo:begin ?coiledCoilb42 ;
faldo:end ?coiledCoile43 .
?coiledCoilb42 faldo:position ?coiledCoilbp44 .
?coiledCoile43 faldo:position ?coiledCoilep45 .
?keyword46 up:range ?coiledCoil41 .
_:299718 a rdf:Statement ;
up:attribution _:299692 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:299719 a rdf:Statement ;
up:attribution _:299693 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:299720 a rdf:Statement ;
up:attribution _:299694 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:299721 a rdf:Statement ;
up:attribution _:299695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:299722 a rdf:Statement ;
up:attribution _:299696 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:299723 a rdf:Statement ;
up:attribution _:299697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:299724 a rdf:Statement ;
up:attribution _:299698 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:299725 a rdf:Statement ;
up:attribution _:299699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:299726 a rdf:Statement ;
up:attribution _:299700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:134 .
_:299727 a rdf:Statement ;
up:attribution _:299701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:449 .
_:299728 a rdf:Statement ;
up:attribution _:299702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:299729 a rdf:Statement ;
up:attribution _:299703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:564 .
_:299730 a rdf:Statement ;
up:attribution _:299704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:572 .
_:299731 a rdf:Statement ;
up:attribution _:299705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:299732 a rdf:Statement ;
up:attribution _:299706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:964 .
_:299733 a rdf:Statement ;
up:attribution _:299707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009279 .
_:299734 a rdf:Statement ;
up:attribution _:299708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008289 .
_:299735 a rdf:Statement ;
up:attribution _:299709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042834 .
_:299736 a rdf:Statement ;
up:attribution _:299710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030258 .
_:299737 a rdf:Statement ;
up:attribution _:299711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043580 .
_:299738 a rdf:Statement ;
up:source unirule:MF_00843 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:299739 a rdf:Statement ;
up:attribution _:299712 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:299740 a rdf:Statement ;
up:source unirule:MF_00843 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:299741 a rdf:Statement ;
up:attribution _:299713 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:299742 a rdf:Statement ;
up:source unirule:MF_00843 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:299743 a rdf:Statement ;
up:attribution _:299714 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:299744 a rdf:Statement ;
up:source unirule:MF_00843 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:299745 a rdf:Statement ;
up:attribution _:299715 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:299746 a rdf:Statement ;
up:source unirule:MF_00843 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:299747 a rdf:Statement ;
up:attribution _:299716 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:299748 a rdf:Statement ;
up:attribution _:299717 ;
rdf:subject ?sam40 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00843
#Rule MF_00843 Created by:? on:2019-05-21 Modified by:Edouard de Castro on:2023-01-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00843 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00843a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP6977652 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977654 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69776MF_0084347 .
?templateMotifSequenceMatchRegionP6977652 faldo:begin ?templateMotifSequenceMatchBeginP6977653 .
?templateMotifSequenceMatchBeginP6977653 faldo:position ?templateMotifSequenceMatchBeginPositionP6977648 ;
faldo:reference isoform:P69776-1 .
?templateMotifSequenceProfileAlignmentOperationP6977654 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69776MF_0084349 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084357 .
?targetMotifMatchRegionMatchBeginMF_0084357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0084358 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084347, 1, (STRLEN(?templateMotifCigarP69776MF_0084347) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084347, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP6977648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084349, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084349) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084349, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084349) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0084350) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084347, 1, (STRLEN(?templateMotifCigarP69776MF_0084347) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084347, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP6977648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084349, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084349) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084349, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084349) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0084350) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP6977669 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977671 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69776MF_0084364 .
?templateMotifSequenceMatchRegionP6977669 faldo:begin ?templateMotifSequenceMatchBeginP6977670 .
?templateMotifSequenceMatchBeginP6977670 faldo:position ?templateMotifSequenceMatchBeginPositionP6977665 ;
faldo:reference isoform:P69776-1 .
?templateMotifSequenceProfileAlignmentOperationP6977671 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69776MF_0084366 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084374 .
?targetMotifMatchRegionMatchBeginMF_0084374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0084375 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084364, 1, (STRLEN(?templateMotifCigarP69776MF_0084364) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084364, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP6977665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084366, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084366) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084366, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084366) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0084367) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084364, 1, (STRLEN(?templateMotifCigarP69776MF_0084364) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084364, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP6977665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084366, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084366) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084366, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084366) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0084367) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP6977686 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977688 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69776MF_0084381 .
?templateMotifSequenceMatchRegionP6977686 faldo:begin ?templateMotifSequenceMatchBeginP6977687 .
?templateMotifSequenceMatchBeginP6977687 faldo:position ?templateMotifSequenceMatchBeginPositionP6977682 ;
faldo:reference isoform:P69776-1 .
?templateMotifSequenceProfileAlignmentOperationP6977688 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69776MF_0084383 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084391 .
?targetMotifMatchRegionMatchBeginMF_0084391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0084392 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084381, 1, (STRLEN(?templateMotifCigarP69776MF_0084381) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084381, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP6977682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084383, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084383) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084383, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084383) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0084384) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP69776101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69776103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69776MF_0084396 .
?templateMotifSequenceMatchRegionP69776101 faldo:begin ?templateMotifSequenceMatchBeginP69776102 .
?templateMotifSequenceMatchBeginP69776102 faldo:position ?templateMotifSequenceMatchBeginPositionP6977697 ;
faldo:reference isoform:P69776-1 .
?templateMotifSequenceProfileAlignmentOperationP69776103 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00843107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69776MF_0084398 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00843106 .
?targetMotifMatchRegionMatchBeginMF_00843106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084399 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00843107 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_0084396, 1, (STRLEN(?templateMotifCigarP69776MF_0084396) - STRLEN(REPLACE(?templateMotifCigarP69776MF_0084396, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP6977697) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_0084398, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084398) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_0084398, 1, (STRLEN(?targetMotifMatchCigarP69776MF_0084398) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_0084398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0084399) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP69776116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69776118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69776MF_00843111 .
?templateMotifSequenceMatchRegionP69776116 faldo:begin ?templateMotifSequenceMatchBeginP69776117 .
?templateMotifSequenceMatchBeginP69776117 faldo:position ?templateMotifSequenceMatchBeginPositionP69776112 ;
faldo:reference isoform:P69776-1 .
?templateMotifSequenceProfileAlignmentOperationP69776118 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00843122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69776MF_00843113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00843121 .
?targetMotifMatchRegionMatchBeginMF_00843121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00843114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00843122 edam:has_input signature:MF_00843 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69776MF_00843111, 1, (STRLEN(?templateMotifCigarP69776MF_00843111) - STRLEN(REPLACE(?templateMotifCigarP69776MF_00843111, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP69776112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69776MF_00843113, 1, (STRLEN(?targetMotifMatchCigarP69776MF_00843113) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_00843113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69776MF_00843113, 1, (STRLEN(?targetMotifMatchCigarP69776MF_00843113) - STRLEN(REPLACE(?targetMotifMatchCigarP69776MF_00843113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00843114) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00843a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon126 {taxon:561 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon126 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon127 {taxon:561 taxon:444888 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon127 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this up:annotation ?samcc128 ;
up:sequence ?thisSequence .
?samcc128 up:range ?samccr129 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr129 faldo:begin ?samccb130 ;
faldo:end ?samcce131 .
?samccb130 faldo:position ?samccbp132 ;
faldo:reference ?thisSequence .
?samcce131 faldo:position ?samccep133 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam40) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00843a46')) AS ?keyword46) .
}
"xsd:string |
