| http://purl.uniprot.org/unirules/MF_00909#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:316080 up:source unirule:MF_00909 .
_:316081 up:source unirule:MF_00909 .
_:316082 up:source unirule:MF_00909 .
_:316083 up:source unirule:MF_00909 .
_:316084 up:source unirule:MF_00909 .
_:316085 up:source unirule:MF_00909 .
_:316086 up:source unirule:MF_00909 .
_:316087 up:source unirule:MF_00909 .
_:316088 up:source unirule:MF_00909 .
_:316089 up:source unirule:MF_00909 .
_:316090 up:source unirule:MF_00909 .
_:316091 up:source unirule:MF_00909 .
_:316092 up:source unirule:MF_00909 .
_:316093 up:source unirule:MF_00909 .
_:316094 up:source unirule:MF_00909 .
_:316095 up:source unirule:MF_00909 .
_:316096 up:source unirule:MF_00909 .
_:316097 up:source unirule:MF_00909 .
_:316098 up:source unirule:MF_00909 .
_:316099 up:source unirule:MF_00909 .
_:316100 up:source unirule:MF_00909 .
_:316101 up:source unirule:MF_00909 .
_:316102 up:source unirule:MF_00909 .
_:316103 up:source unirule:MF_00909 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0003924 ,
GO:0005525 ,
GO:0005737 ,
GO:0032153 ,
GO:0043093 ,
GO:0051258 ,
GO:0090529 ,
keyword:131 ,
keyword:132 ,
keyword:342 ,
keyword:547 ,
keyword:717 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cell division protein FtsZ' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ftsZ' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Assembles at midcell at the inner surface of the cytoplasmic membrane' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FtsZ family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:37565 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:37565 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:37565 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:37565 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:37565 .
_:316104 a rdf:Statement ;
up:attribution _:316080 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:316105 a rdf:Statement ;
up:attribution _:316081 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:316106 a rdf:Statement ;
up:attribution _:316082 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:316107 a rdf:Statement ;
up:attribution _:316083 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:316108 a rdf:Statement ;
up:attribution _:316084 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:316109 a rdf:Statement ;
up:attribution _:316085 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:316110 a rdf:Statement ;
up:attribution _:316086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:316111 a rdf:Statement ;
up:attribution _:316087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:316112 a rdf:Statement ;
up:attribution _:316088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:316113 a rdf:Statement ;
up:attribution _:316089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:316114 a rdf:Statement ;
up:attribution _:316090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:316115 a rdf:Statement ;
up:attribution _:316091 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:717 .
_:316116 a rdf:Statement ;
up:attribution _:316092 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:316117 a rdf:Statement ;
up:attribution _:316093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003924 .
_:316118 a rdf:Statement ;
up:attribution _:316094 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0090529 .
_:316119 a rdf:Statement ;
up:attribution _:316095 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043093 .
_:316120 a rdf:Statement ;
up:attribution _:316096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051258 .
_:316121 a rdf:Statement ;
up:attribution _:316097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032153 .
_:316122 a rdf:Statement ;
up:attribution _:316098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:316123 a rdf:Statement ;
up:source unirule:MF_00909 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:316124 a rdf:Statement ;
up:attribution _:316099 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:316125 a rdf:Statement ;
up:source unirule:MF_00909 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:316126 a rdf:Statement ;
up:attribution _:316100 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:316127 a rdf:Statement ;
up:source unirule:MF_00909 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:316128 a rdf:Statement ;
up:attribution _:316101 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:316129 a rdf:Statement ;
up:source unirule:MF_00909 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:316130 a rdf:Statement ;
up:attribution _:316102 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:316131 a rdf:Statement ;
up:source unirule:MF_00909 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:316132 a rdf:Statement ;
up:attribution _:316103 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00909
#Rule MF_00909 Created by:? on:2011-10-21 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon42 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00909 .
?thisOrganism rdfs:subClassOf+ ?supertaxon42 .
BIND(URI(CONCAT(STR(?this), '#MF_00909a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionP0A02948 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A02950 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A029MF_0090943 .
?templateMotifSequenceMatchRegionP0A02948 faldo:begin ?templateMotifSequenceMatchBeginP0A02949 .
?templateMotifSequenceMatchBeginP0A02949 faldo:position ?templateMotifSequenceMatchBeginPositionP0A02944 ;
faldo:reference isoform:P0A029-1 .
?templateMotifSequenceProfileAlignmentOperationP0A02950 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0090954 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A029MF_0090945 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0090953 .
?targetMotifMatchRegionMatchBeginMF_0090953 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090946 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0090954 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090943, 1, (STRLEN(?templateMotifCigarP0A029MF_0090943) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090943, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0A02944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090945, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090945) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090945, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090945) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0090946) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090943, 1, (STRLEN(?templateMotifCigarP0A029MF_0090943) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090943, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0A02944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090945, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090945) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090945, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090945) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0090946) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[GA]G[ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP0A02965 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A02967 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A029MF_0090960 .
?templateMotifSequenceMatchRegionP0A02965 faldo:begin ?templateMotifSequenceMatchBeginP0A02966 .
?templateMotifSequenceMatchBeginP0A02966 faldo:position ?templateMotifSequenceMatchBeginPositionP0A02961 ;
faldo:reference isoform:P0A029-1 .
?templateMotifSequenceProfileAlignmentOperationP0A02967 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0090971 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A029MF_0090962 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0090970 .
?targetMotifMatchRegionMatchBeginMF_0090970 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090963 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0090971 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090960, 1, (STRLEN(?templateMotifCigarP0A029MF_0090960) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090960, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP0A02961) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090962, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090962) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090962, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090962) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0090963) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090960, 1, (STRLEN(?templateMotifCigarP0A029MF_0090960) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090960, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP0A02961) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090962, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090962) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090962, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090962) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0090963) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('G[TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0A02982 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A02984 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A029MF_0090977 .
?templateMotifSequenceMatchRegionP0A02982 faldo:begin ?templateMotifSequenceMatchBeginP0A02983 .
?templateMotifSequenceMatchBeginP0A02983 faldo:position ?templateMotifSequenceMatchBeginPositionP0A02978 ;
faldo:reference isoform:P0A029-1 .
?templateMotifSequenceProfileAlignmentOperationP0A02984 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0090988 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A029MF_0090979 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0090987 .
?targetMotifMatchRegionMatchBeginMF_0090987 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090980 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0090988 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090977, 1, (STRLEN(?templateMotifCigarP0A029MF_0090977) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090977, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0A02978) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090979, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090979) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090979, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090979) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0090980) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP0A02997 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A02999 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A029MF_0090992 .
?templateMotifSequenceMatchRegionP0A02997 faldo:begin ?templateMotifSequenceMatchBeginP0A02998 .
?templateMotifSequenceMatchBeginP0A02998 faldo:position ?templateMotifSequenceMatchBeginPositionP0A02993 ;
faldo:reference isoform:P0A029-1 .
?templateMotifSequenceProfileAlignmentOperationP0A02999 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00909103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A029MF_0090994 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00909102 .
?targetMotifMatchRegionMatchBeginMF_00909102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090995 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00909103 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_0090992, 1, (STRLEN(?templateMotifCigarP0A029MF_0090992) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_0090992, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP0A02993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_0090994, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090994) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_0090994, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_0090994) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_0090994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0090995) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP0A029112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A029114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A029MF_00909107 .
?templateMotifSequenceMatchRegionP0A029112 faldo:begin ?templateMotifSequenceMatchBeginP0A029113 .
?templateMotifSequenceMatchBeginP0A029113 faldo:position ?templateMotifSequenceMatchBeginPositionP0A029108 ;
faldo:reference isoform:P0A029-1 .
?templateMotifSequenceProfileAlignmentOperationP0A029114 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00909118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A029MF_00909109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00909117 .
?targetMotifMatchRegionMatchBeginMF_00909117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00909110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00909118 edam:has_input signature:MF_00909 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A029MF_00909107, 1, (STRLEN(?templateMotifCigarP0A029MF_00909107) - STRLEN(REPLACE(?templateMotifCigarP0A029MF_00909107, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP0A029108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A029MF_00909109, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_00909109) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_00909109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A029MF_00909109, 1, (STRLEN(?targetMotifMatchCigarP0A029MF_00909109) - STRLEN(REPLACE(?targetMotifMatchCigarP0A029MF_00909109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00909110) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00909a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
}
"xsd:string |
