| http://purl.uniprot.org/unirules/MF_00935#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:325434 up:source unirule:MF_00935 .
_:325435 up:source unirule:MF_00935 .
_:325436 up:source unirule:MF_00935 .
_:325437 up:source unirule:MF_00935 .
_:325438 up:source unirule:MF_00935 .
_:325439 up:source unirule:MF_00935 .
_:325440 up:source unirule:MF_00935 .
_:325441 up:source unirule:MF_00935 .
_:325442 up:source unirule:MF_00935 .
_:325443 up:source unirule:MF_00935 .
_:325444 up:source unirule:MF_00935 .
_:325445 up:source unirule:MF_00935 .
_:325446 up:source unirule:MF_00935 .
_:325447 up:source unirule:MF_00935 .
_:325448 up:source unirule:MF_00935 .
_:325449 up:source unirule:MF_00935 .
_:325450 up:source unirule:MF_00935 .
_:325451 up:source unirule:MF_00935 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0000286 ,
GO:0006522 ,
GO:0051287 ,
keyword:520 ,
keyword:547 ,
keyword:560 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD(+)-dependent oxidative deamination of L-alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ornithine cyclodeaminase/mu-crystallin family. Archaeal alanine dehydrogenase subfamily.' .
?case4 up:recommendedName ?name5 .
?name5 up:ecName '1.4.1.1' ;
up:fullName 'Alanine dehydrogenase' ;
up:shortName 'AlaDH' ;
rdf:type up:Structured_Name .
?case6 up:recommendedName ?name7 .
?name7 up:ecName '1.4.1.1' ;
up:fullName 'Putative alanine dehydrogenase' ;
up:shortName 'AlaDH' ;
rdf:type up:Structured_Name .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57540 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57540 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:57540 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:57540 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:57540 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:57540 .
_:325452 a rdf:Statement ;
up:attribution _:325434 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:325453 a rdf:Statement ;
up:attribution _:325435 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:325454 a rdf:Statement ;
up:attribution _:325436 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:325455 a rdf:Statement ;
up:attribution _:325437 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:325456 a rdf:Statement ;
up:attribution _:325438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:325457 a rdf:Statement ;
up:attribution _:325439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:325458 a rdf:Statement ;
up:attribution _:325440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000286 .
_:325459 a rdf:Statement ;
up:attribution _:325441 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051287 .
_:325460 a rdf:Statement ;
up:attribution _:325442 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006522 .
_:325461 a rdf:Statement ;
up:attribution _:325443 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:325462 a rdf:Statement ;
up:attribution _:325444 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:325463 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:325464 a rdf:Statement ;
up:attribution _:325445 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:325465 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:325466 a rdf:Statement ;
up:attribution _:325446 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:325467 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325468 a rdf:Statement ;
up:attribution _:325447 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325469 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:325470 a rdf:Statement ;
up:attribution _:325448 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:325471 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:325472 a rdf:Statement ;
up:attribution _:325449 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:325473 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:325474 a rdf:Statement ;
up:attribution _:325450 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:325475 a rdf:Statement ;
up:source unirule:MF_00935 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:325476 a rdf:Statement ;
up:attribution _:325451 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00935
#Rule MF_00935 Created by:? on:2013-01-18 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon56 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00935 .
?thisOrganism rdfs:subClassOf+ ?supertaxon56 .
BIND(URI(CONCAT(STR(?this), '#MF_00935a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionO2860862 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2860864 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_0093557 .
?templateMotifSequenceMatchRegionO2860862 faldo:begin ?templateMotifSequenceMatchBeginO2860863 .
?templateMotifSequenceMatchBeginO2860863 faldo:position ?templateMotifSequenceMatchBeginPositionO2860858 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO2860864 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093568 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_0093559 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093567 .
?targetMotifMatchRegionMatchBeginMF_0093567 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093560 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093568 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093557, 1, (STRLEN(?templateMotifCigarO28608MF_0093557) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093557, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionO2860858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093559, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093559) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093559, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093559) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0093560) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093557, 1, (STRLEN(?templateMotifCigarO28608MF_0093557) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093557, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionO2860858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093559, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093559) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093559, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093559) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0093560) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionO2860879 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2860881 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_0093574 .
?templateMotifSequenceMatchRegionO2860879 faldo:begin ?templateMotifSequenceMatchBeginO2860880 .
?templateMotifSequenceMatchBeginO2860880 faldo:position ?templateMotifSequenceMatchBeginPositionO2860875 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO2860881 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093585 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_0093576 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093584 .
?targetMotifMatchRegionMatchBeginMF_0093584 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093577 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093585 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093574, 1, (STRLEN(?templateMotifCigarO28608MF_0093574) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093574, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionO2860875) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093576, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093576) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093576, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093576, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093576) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093576, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0093577) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093574, 1, (STRLEN(?templateMotifCigarO28608MF_0093574) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093574, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionO2860875) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093576, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093576) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093576, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093576, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093576) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093576, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0093577) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[DN][ARNDCQEGHILKMFPSTWYVBZJUOX][RKH]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionO2860896 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2860898 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_0093591 .
?templateMotifSequenceMatchRegionO2860896 faldo:begin ?templateMotifSequenceMatchBeginO2860897 .
?templateMotifSequenceMatchBeginO2860897 faldo:position ?templateMotifSequenceMatchBeginPositionO2860892 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO2860898 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00935102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_0093593 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00935101 .
?targetMotifMatchRegionMatchBeginMF_00935101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093594 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00935102 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093591, 1, (STRLEN(?templateMotifCigarO28608MF_0093591) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093591, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionO2860892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093593, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093593) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093593, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093593) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0093594) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_0093591, 1, (STRLEN(?templateMotifCigarO28608MF_0093591) - STRLEN(REPLACE(?templateMotifCigarO28608MF_0093591, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionO2860892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_0093593, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093593) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_0093593, 1, (STRLEN(?targetMotifMatchCigarO28608MF_0093593) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_0093593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0093594) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionO28608113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28608115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_00935108 .
?templateMotifSequenceMatchRegionO28608113 faldo:begin ?templateMotifSequenceMatchBeginO28608114 .
?templateMotifSequenceMatchBeginO28608114 faldo:position ?templateMotifSequenceMatchBeginPositionO28608109 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO28608115 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00935119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_00935110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00935118 .
?targetMotifMatchRegionMatchBeginMF_00935118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00935111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00935119 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_00935108, 1, (STRLEN(?templateMotifCigarO28608MF_00935108) - STRLEN(REPLACE(?templateMotifCigarO28608MF_00935108, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionO28608109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_00935110, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935110) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_00935110, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935110) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00935111) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionO28608128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28608130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_00935123 .
?templateMotifSequenceMatchRegionO28608128 faldo:begin ?templateMotifSequenceMatchBeginO28608129 .
?templateMotifSequenceMatchBeginO28608129 faldo:position ?templateMotifSequenceMatchBeginPositionO28608124 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO28608130 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00935134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_00935125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00935133 .
?targetMotifMatchRegionMatchBeginMF_00935133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00935126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00935134 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_00935123, 1, (STRLEN(?templateMotifCigarO28608MF_00935123) - STRLEN(REPLACE(?templateMotifCigarO28608MF_00935123, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionO28608124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_00935125, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935125) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_00935125, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935125) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00935126) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionO28608143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28608145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_00935138 .
?templateMotifSequenceMatchRegionO28608143 faldo:begin ?templateMotifSequenceMatchBeginO28608144 .
?templateMotifSequenceMatchBeginO28608144 faldo:position ?templateMotifSequenceMatchBeginPositionO28608139 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO28608145 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00935149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_00935140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00935148 .
?targetMotifMatchRegionMatchBeginMF_00935148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00935141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00935149 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_00935138, 1, (STRLEN(?templateMotifCigarO28608MF_00935138) - STRLEN(REPLACE(?templateMotifCigarO28608MF_00935138, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionO28608139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_00935140, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935140) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_00935140, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935140) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00935141) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionO28608158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28608160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28608MF_00935153 .
?templateMotifSequenceMatchRegionO28608158 faldo:begin ?templateMotifSequenceMatchBeginO28608159 .
?templateMotifSequenceMatchBeginO28608159 faldo:position ?templateMotifSequenceMatchBeginPositionO28608154 ;
faldo:reference isoform:O28608-1 .
?templateMotifSequenceProfileAlignmentOperationO28608160 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00935164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28608MF_00935155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00935163 .
?targetMotifMatchRegionMatchBeginMF_00935163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00935156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00935164 edam:has_input signature:MF_00935 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28608MF_00935153, 1, (STRLEN(?templateMotifCigarO28608MF_00935153) - STRLEN(REPLACE(?templateMotifCigarO28608MF_00935153, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionO28608154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28608MF_00935155, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935155) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28608MF_00935155, 1, (STRLEN(?targetMotifMatchCigarO28608MF_00935155) - STRLEN(REPLACE(?targetMotifMatchCigarO28608MF_00935155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00935156) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a5')) AS ?name5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_00935a7')) AS ?name7) .
}
}
"xsd:string |
