| http://purl.uniprot.org/unirules/MF_00936#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:325875 up:source unirule:MF_00936 .
_:325876 up:source unirule:MF_00936 .
_:325877 up:source unirule:MF_00936 .
_:325878 up:source unirule:MF_00936 .
_:325879 up:source unirule:MF_00936 .
_:325880 up:source unirule:MF_00936 .
_:325881 up:source unirule:MF_00936 .
_:325882 up:source unirule:MF_00936 .
_:325883 up:source unirule:MF_00936 .
_:325884 up:source unirule:MF_00936 .
_:325885 up:source unirule:MF_00936 .
_:325886 up:source unirule:MF_00936 .
_:325887 up:source unirule:MF_00936 .
_:325888 up:source unirule:MF_00936 .
_:325889 up:source unirule:MF_00936 .
_:325890 up:source unirule:MF_00936 .
_:325891 up:source unirule:MF_00936 .
_:325892 up:source unirule:MF_00936 .
_:325893 up:source unirule:MF_00936 .
_:325894 up:source unirule:MF_00936 .
_:325895 up:source unirule:MF_00936 .
_:325896 up:source unirule:MF_00936 .
_:325897 up:source unirule:MF_00936 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0006265 ,
GO:0007059 ,
GO:0019897 ,
keyword:1003 ,
keyword:238 ,
keyword:413 ,
keyword:472 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'DNA topoisomerase 4 subunit A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Topoisomerase IV subunit A' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'parC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of ParC and ParE.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(5'-phospho-DNA)-tyrosine intermediate" .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with DNA' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
_:325898 a rdf:Statement ;
up:attribution _:325875 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:325899 a rdf:Statement ;
up:attribution _:325876 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:325900 a rdf:Statement ;
up:attribution _:325877 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:325901 a rdf:Statement ;
up:attribution _:325878 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:325902 a rdf:Statement ;
up:attribution _:325879 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:325903 a rdf:Statement ;
up:attribution _:325880 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:325904 a rdf:Statement ;
up:attribution _:325881 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:325905 a rdf:Statement ;
up:attribution _:325882 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:325906 a rdf:Statement ;
up:attribution _:325883 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:325907 a rdf:Statement ;
up:attribution _:325884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:325908 a rdf:Statement ;
up:attribution _:325885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:325909 a rdf:Statement ;
up:attribution _:325886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:325910 a rdf:Statement ;
up:attribution _:325887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:325911 a rdf:Statement ;
up:attribution _:325888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:325912 a rdf:Statement ;
up:attribution _:325889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:325913 a rdf:Statement ;
up:attribution _:325890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:325914 a rdf:Statement ;
up:attribution _:325891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:325915 a rdf:Statement ;
up:attribution _:325892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019897 .
_:325916 a rdf:Statement ;
up:source unirule:MF_00936 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:325917 a rdf:Statement ;
up:attribution _:325893 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:325918 a rdf:Statement ;
up:source unirule:MF_00936 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:325919 a rdf:Statement ;
up:attribution _:325894 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:325920 a rdf:Statement ;
up:source unirule:MF_00936 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325921 a rdf:Statement ;
up:attribution _:325895 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:325922 a rdf:Statement ;
up:source unirule:MF_00936 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:325923 a rdf:Statement ;
up:attribution _:325896 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:325924 a rdf:Statement ;
up:source unirule:MF_00936 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:325925 a rdf:Statement ;
up:attribution _:325897 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00936
#Rule MF_00936 Created by:? on:2013-01-21 Modified by:Catherine Rivoire on:2023-10-10
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00936 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00936a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP0AFI245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFI247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFI2MF_0093640 .
?templateMotifSequenceMatchRegionP0AFI245 faldo:begin ?templateMotifSequenceMatchBeginP0AFI246 .
?templateMotifSequenceMatchBeginP0AFI246 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFI241 ;
faldo:reference isoform:P0AFI2-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFI247 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFI2MF_0093642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093650 .
?targetMotifMatchRegionMatchBeginMF_0093650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093651 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFI2MF_0093640, 1, (STRLEN(?templateMotifCigarP0AFI2MF_0093640) - STRLEN(REPLACE(?templateMotifCigarP0AFI2MF_0093640, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP0AFI241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093642, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093642) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093642, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093642) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0093643) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP0AFI260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFI262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFI2MF_0093655 .
?templateMotifSequenceMatchRegionP0AFI260 faldo:begin ?templateMotifSequenceMatchBeginP0AFI261 .
?templateMotifSequenceMatchBeginP0AFI261 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFI256 ;
faldo:reference isoform:P0AFI2-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFI262 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093666 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFI2MF_0093657 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093665 .
?targetMotifMatchRegionMatchBeginMF_0093665 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093658 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093666 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFI2MF_0093655, 1, (STRLEN(?templateMotifCigarP0AFI2MF_0093655) - STRLEN(REPLACE(?templateMotifCigarP0AFI2MF_0093655, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0AFI256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093657, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093657) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093657, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093657) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093657, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0093658) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0AFI275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFI277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFI2MF_0093670 .
?templateMotifSequenceMatchRegionP0AFI275 faldo:begin ?templateMotifSequenceMatchBeginP0AFI276 .
?templateMotifSequenceMatchBeginP0AFI276 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFI271 ;
faldo:reference isoform:P0AFI2-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFI277 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093681 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFI2MF_0093672 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093680 .
?targetMotifMatchRegionMatchBeginMF_0093680 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093673 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093681 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFI2MF_0093670, 1, (STRLEN(?templateMotifCigarP0AFI2MF_0093670) - STRLEN(REPLACE(?templateMotifCigarP0AFI2MF_0093670, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP0AFI271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093672, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093672, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093672) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093672, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0093673) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0AFI290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFI292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFI2MF_0093685 .
?templateMotifSequenceMatchRegionP0AFI290 faldo:begin ?templateMotifSequenceMatchBeginP0AFI291 .
?templateMotifSequenceMatchBeginP0AFI291 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFI286 ;
faldo:reference isoform:P0AFI2-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFI292 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093696 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFI2MF_0093687 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093695 .
?targetMotifMatchRegionMatchBeginMF_0093695 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093688 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093696 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFI2MF_0093685, 1, (STRLEN(?templateMotifCigarP0AFI2MF_0093685) - STRLEN(REPLACE(?templateMotifCigarP0AFI2MF_0093685, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0AFI286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093687, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093687) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093687, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFI2MF_0093687, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_0093687) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_0093687, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0093688) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0AFI2105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFI2107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFI2MF_00936100 .
?templateMotifSequenceMatchRegionP0AFI2105 faldo:begin ?templateMotifSequenceMatchBeginP0AFI2106 .
?templateMotifSequenceMatchBeginP0AFI2106 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFI2101 ;
faldo:reference isoform:P0AFI2-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFI2107 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00936111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFI2MF_00936102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00936110 .
?targetMotifMatchRegionMatchBeginMF_00936110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00936103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00936111 edam:has_input signature:MF_00936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFI2MF_00936100, 1, (STRLEN(?templateMotifCigarP0AFI2MF_00936100) - STRLEN(REPLACE(?templateMotifCigarP0AFI2MF_00936100, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP0AFI2101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFI2MF_00936102, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_00936102) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_00936102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFI2MF_00936102, 1, (STRLEN(?targetMotifMatchCigarP0AFI2MF_00936102) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFI2MF_00936102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00936103) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00936a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
