| http://purl.uniprot.org/unirules/MF_00941#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:327912 up:source unirule:MF_00941 .
_:327913 up:source unirule:MF_00941 .
_:327914 up:source unirule:MF_00941 .
_:327915 up:source unirule:MF_00941 .
_:327916 up:source unirule:MF_00941 .
_:327917 up:source unirule:MF_00941 .
_:327918 up:source unirule:MF_00941 .
_:327919 up:source unirule:MF_00941 .
_:327920 up:source unirule:MF_00941 .
_:327921 up:source unirule:MF_00941 .
_:327922 up:source unirule:MF_00941 .
_:327923 up:source unirule:MF_00941 .
_:327924 up:source unirule:MF_00941 .
_:327925 up:source unirule:MF_00941 .
_:327926 up:source unirule:MF_00941 .
_:327927 up:source unirule:MF_00941 .
_:327928 up:source unirule:MF_00941 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008727 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.-' ;
up:fullName 'GDP-mannose mannosyl hydrolase' ;
up:shortName 'GDPMH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gmm' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Hydrolyzes GDP-mannose.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Nudix hydrolase family.' .
?case7 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:18420 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:18420 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:18420 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf ?molecule48 .
?molecule48 rdfs:label 'substrate' .
_:327929 a rdf:Statement ;
up:attribution _:327912 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:327930 a rdf:Statement ;
up:attribution _:327913 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:327931 a rdf:Statement ;
up:attribution _:327914 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:327932 a rdf:Statement ;
up:attribution _:327915 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:327933 a rdf:Statement ;
up:attribution _:327916 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:327934 a rdf:Statement ;
up:attribution _:327917 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:327935 a rdf:Statement ;
up:attribution _:327918 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:327936 a rdf:Statement ;
up:attribution _:327919 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008727 .
_:327937 a rdf:Statement ;
up:attribution _:327920 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:327938 a rdf:Statement ;
up:attribution _:327921 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:327939 a rdf:Statement ;
up:attribution _:327922 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:327940 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:327941 a rdf:Statement ;
up:attribution _:327923 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:327942 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:327943 a rdf:Statement ;
up:attribution _:327924 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:327944 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:327945 a rdf:Statement ;
up:attribution _:327925 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:327946 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:327947 a rdf:Statement ;
up:attribution _:327926 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:327948 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:327949 a rdf:Statement ;
up:attribution _:327927 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:327950 a rdf:Statement ;
up:source unirule:MF_00941 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:327951 a rdf:Statement ;
up:attribution _:327928 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00941
#Rule MF_00941 Created by:? on:2013-02-07 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00941 .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(URI(CONCAT(STR(?this), '#MF_00941a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP3205656 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3205658 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32056MF_0094151 .
?templateMotifSequenceMatchRegionP3205656 faldo:begin ?templateMotifSequenceMatchBeginP3205657 .
?templateMotifSequenceMatchBeginP3205657 faldo:position ?templateMotifSequenceMatchBeginPositionP3205652 ;
faldo:reference isoform:P32056-1 .
?templateMotifSequenceProfileAlignmentOperationP3205658 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0094162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32056MF_0094153 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0094161 .
?targetMotifMatchRegionMatchBeginMF_0094161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0094154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0094162 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094151, 1, (STRLEN(?templateMotifCigarP32056MF_0094151) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094151, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP3205652) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0094154) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094151, 1, (STRLEN(?templateMotifCigarP32056MF_0094151) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094151, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP3205652) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0094154) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094151, 1, (STRLEN(?templateMotifCigarP32056MF_0094151) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094151, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP3205652) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094153, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094153) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0094154) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'Q')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP3205677 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3205679 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32056MF_0094172 .
?templateMotifSequenceMatchRegionP3205677 faldo:begin ?templateMotifSequenceMatchBeginP3205678 .
?templateMotifSequenceMatchBeginP3205678 faldo:position ?templateMotifSequenceMatchBeginPositionP3205673 ;
faldo:reference isoform:P32056-1 .
?templateMotifSequenceProfileAlignmentOperationP3205679 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0094183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32056MF_0094174 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0094182 .
?targetMotifMatchRegionMatchBeginMF_0094182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0094175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0094183 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094172, 1, (STRLEN(?templateMotifCigarP32056MF_0094172) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094172, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP3205673) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094174, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094174) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094174, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094174) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0094175) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094172, 1, (STRLEN(?templateMotifCigarP32056MF_0094172) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094172, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP3205673) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094174, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094174) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094174, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094174) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0094175) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'FL')) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP3205694 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3205696 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32056MF_0094189 .
?templateMotifSequenceMatchRegionP3205694 faldo:begin ?templateMotifSequenceMatchBeginP3205695 .
?templateMotifSequenceMatchBeginP3205695 faldo:position ?templateMotifSequenceMatchBeginPositionP3205690 ;
faldo:reference isoform:P32056-1 .
?templateMotifSequenceProfileAlignmentOperationP3205696 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00941100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32056MF_0094191 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0094199 .
?targetMotifMatchRegionMatchBeginMF_0094199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0094192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00941100 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_0094189, 1, (STRLEN(?templateMotifCigarP32056MF_0094189) - STRLEN(REPLACE(?templateMotifCigarP32056MF_0094189, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP3205690) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_0094191, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094191) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_0094191, 1, (STRLEN(?targetMotifMatchCigarP32056MF_0094191) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_0094191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0094192) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP32056109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32056111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32056MF_00941104 .
?templateMotifSequenceMatchRegionP32056109 faldo:begin ?templateMotifSequenceMatchBeginP32056110 .
?templateMotifSequenceMatchBeginP32056110 faldo:position ?templateMotifSequenceMatchBeginPositionP32056105 ;
faldo:reference isoform:P32056-1 .
?templateMotifSequenceProfileAlignmentOperationP32056111 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00941115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32056MF_00941106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00941114 .
?targetMotifMatchRegionMatchBeginMF_00941114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00941107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00941115 edam:has_input signature:MF_00941 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32056MF_00941104, 1, (STRLEN(?templateMotifCigarP32056MF_00941104) - STRLEN(REPLACE(?templateMotifCigarP32056MF_00941104, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP32056105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32056MF_00941106, 1, (STRLEN(?targetMotifMatchCigarP32056MF_00941106) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_00941106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32056MF_00941106, 1, (STRLEN(?targetMotifMatchCigarP32056MF_00941106) - STRLEN(REPLACE(?targetMotifMatchCigarP32056MF_00941106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00941107) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00941a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag119) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag119, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
