| http://purl.uniprot.org/unirules/MF_00942#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:328387 up:source unirule:MF_00942 .
_:328388 up:source unirule:MF_00942 .
_:328389 up:source unirule:MF_00942 .
_:328390 up:source unirule:MF_00942 .
_:328391 up:source unirule:MF_00942 .
_:328392 up:source unirule:MF_00942 .
_:328393 up:source unirule:MF_00942 .
_:328394 up:source unirule:MF_00942 .
_:328395 up:source unirule:MF_00942 .
_:328396 up:source unirule:MF_00942 .
_:328397 up:source unirule:MF_00942 .
_:328398 up:source unirule:MF_00942 .
_:328399 up:source unirule:MF_00942 .
_:328400 up:source unirule:MF_00942 .
_:328401 up:source unirule:MF_00942 .
_:328402 up:source unirule:MF_00942 .
_:328403 up:source unirule:MF_00942 .
_:328404 up:source unirule:MF_00942 .
_:328405 up:source unirule:MF_00942 .
_:328406 up:source unirule:MF_00942 .
_:328407 up:source unirule:MF_00942 .
_:328408 up:source unirule:MF_00942 .
_:328409 up:source unirule:MF_00942 .
_:328410 up:source unirule:MF_00942 .
_:328411 up:source unirule:MF_00942 .
_:328412 up:source unirule:MF_00942 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003677 ,
GO:0003906 ,
GO:0006281 ,
GO:0019104 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:326 ,
keyword:378 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.99.18' ;
up:fullName 'Endonuclease III' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DNA-(apurinic or apyrimidinic site) lyase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'nth' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Nth/MutY family.' .
?case8 up:classifiedWith GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 ,
?annotation28 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:49883 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:49883 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:49883 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:49883 .
_:328413 a rdf:Statement ;
up:attribution _:328387 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:328414 a rdf:Statement ;
up:attribution _:328388 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:328415 a rdf:Statement ;
up:attribution _:328389 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:328416 a rdf:Statement ;
up:attribution _:328390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:328417 a rdf:Statement ;
up:attribution _:328391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:328418 a rdf:Statement ;
up:attribution _:328392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:328419 a rdf:Statement ;
up:attribution _:328393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:328420 a rdf:Statement ;
up:attribution _:328394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:328421 a rdf:Statement ;
up:attribution _:328395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:328422 a rdf:Statement ;
up:attribution _:328396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:328423 a rdf:Statement ;
up:attribution _:328397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:328424 a rdf:Statement ;
up:attribution _:328398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:328425 a rdf:Statement ;
up:attribution _:328399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:328426 a rdf:Statement ;
up:attribution _:328400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019104 .
_:328427 a rdf:Statement ;
up:attribution _:328401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003906 .
_:328428 a rdf:Statement ;
up:attribution _:328402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:328429 a rdf:Statement ;
up:attribution _:328403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:328430 a rdf:Statement ;
up:attribution _:328404 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:328431 a rdf:Statement ;
up:attribution _:328405 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:328432 a rdf:Statement ;
up:attribution _:328406 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:328433 a rdf:Statement ;
up:attribution _:328407 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:328434 a rdf:Statement ;
up:attribution _:328408 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:328435 a rdf:Statement ;
up:source unirule:MF_00942 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:328436 a rdf:Statement ;
up:attribution _:328409 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:328437 a rdf:Statement ;
up:source unirule:MF_00942 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:328438 a rdf:Statement ;
up:attribution _:328410 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:328439 a rdf:Statement ;
up:source unirule:MF_00942 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:328440 a rdf:Statement ;
up:attribution _:328411 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:328441 a rdf:Statement ;
up:source unirule:MF_00942 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:328442 a rdf:Statement ;
up:attribution _:328412 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00942
#Rule MF_00942 Created by:? on:2013-02-13 Modified by:Elisabeth Coudert on:2024-01-30
VALUES ?supertaxon34 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00942 .
?thisOrganism rdfs:subClassOf+ ?supertaxon34 .
BIND(URI(CONCAT(STR(?this), '#MF_00942a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00942a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00942a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00942a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00942a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00942a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0AB8340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB8342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB83MF_0094235 .
?templateMotifSequenceMatchRegionP0AB8340 faldo:begin ?templateMotifSequenceMatchBeginP0AB8341 .
?templateMotifSequenceMatchBeginP0AB8341 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB8336 ;
faldo:reference isoform:P0AB83-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB8342 edam:has_input signature:MF_00942 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0094246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB83MF_0094237 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0094245 .
?targetMotifMatchRegionMatchBeginMF_0094245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0094238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0094246 edam:has_input signature:MF_00942 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB83MF_0094235, 1, (STRLEN(?templateMotifCigarP0AB83MF_0094235) - STRLEN(REPLACE(?templateMotifCigarP0AB83MF_0094235, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP0AB8336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0094238) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB83MF_0094235, 1, (STRLEN(?templateMotifCigarP0AB83MF_0094235) - STRLEN(REPLACE(?templateMotifCigarP0AB83MF_0094235, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP0AB8336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0094238) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB83MF_0094235, 1, (STRLEN(?templateMotifCigarP0AB83MF_0094235) - STRLEN(REPLACE(?templateMotifCigarP0AB83MF_0094235, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP0AB8336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0094238) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB83MF_0094235, 1, (STRLEN(?templateMotifCigarP0AB83MF_0094235) - STRLEN(REPLACE(?templateMotifCigarP0AB83MF_0094235, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP0AB8336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB83MF_0094237, 1, (STRLEN(?targetMotifMatchCigarP0AB83MF_0094237) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB83MF_0094237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0094238) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag59) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag59, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
