| http://purl.uniprot.org/unirules/MF_00960#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:334227 up:source unirule:MF_00960 .
_:334228 up:source unirule:MF_00960 .
_:334229 up:source unirule:MF_00960 .
_:334230 up:source unirule:MF_00960 .
_:334231 up:source unirule:MF_00960 .
_:334232 up:source unirule:MF_00960 .
_:334233 up:source unirule:MF_00960 .
_:334234 up:source unirule:MF_00960 .
_:334235 up:source unirule:MF_00960 .
_:334236 up:source unirule:MF_00960 .
_:334237 up:source unirule:MF_00960 .
_:334238 up:source unirule:MF_00960 .
_:334239 up:source unirule:MF_00960 .
_:334240 up:source unirule:MF_00960 .
_:334241 up:source unirule:MF_00960 .
_:334242 up:source unirule:MF_00960 .
_:334243 up:source unirule:MF_00960 .
_:334244 up:source unirule:MF_00960 .
_:334245 up:source unirule:MF_00960 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0009073 ,
GO:0016744 ,
keyword:28 ,
keyword:57 ,
keyword:704 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.2.1.10' ;
up:fullName '2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase' ;
up:shortName 'ADH synthase' ,
'ADHS' ,
'ADTH synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel "aroA'" .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes a transaldol reaction between 6-deoxy-5-ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodecamer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DeoC/FbaB aldolase family. ADHS subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:58861 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:58861 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:58861 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:58861 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
_:334246 a rdf:Statement ;
up:attribution _:334227 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:334247 a rdf:Statement ;
up:attribution _:334228 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:334248 a rdf:Statement ;
up:attribution _:334229 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:334249 a rdf:Statement ;
up:attribution _:334230 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:334250 a rdf:Statement ;
up:attribution _:334231 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:334251 a rdf:Statement ;
up:attribution _:334232 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:334252 a rdf:Statement ;
up:attribution _:334233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:334253 a rdf:Statement ;
up:attribution _:334234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:334254 a rdf:Statement ;
up:attribution _:334235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:334255 a rdf:Statement ;
up:attribution _:334236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:334256 a rdf:Statement ;
up:attribution _:334237 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016744 .
_:334257 a rdf:Statement ;
up:attribution _:334238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009073 .
_:334258 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:334259 a rdf:Statement ;
up:attribution _:334239 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:334260 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:334261 a rdf:Statement ;
up:attribution _:334240 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:334262 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:334263 a rdf:Statement ;
up:attribution _:334241 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:334264 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:334265 a rdf:Statement ;
up:attribution _:334242 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:334266 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:334267 a rdf:Statement ;
up:attribution _:334243 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:334268 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:334269 a rdf:Statement ;
up:attribution _:334244 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:334270 a rdf:Statement ;
up:source unirule:MF_00960 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:334271 a rdf:Statement ;
up:attribution _:334245 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00960
#Rule MF_00960 Created by:? on:2013-05-14 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon53 {taxon:32069 taxon:28221 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00960 .
?thisOrganism rdfs:subClassOf+ ?supertaxon53 .
BIND(URI(CONCAT(STR(?this), '#MF_00960a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionQ5784359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5784361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_0096054 .
?templateMotifSequenceMatchRegionQ5784359 faldo:begin ?templateMotifSequenceMatchBeginQ5784360 .
?templateMotifSequenceMatchBeginQ5784360 faldo:position ?templateMotifSequenceMatchBeginPositionQ5784355 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ5784361 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096065 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_0096056 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096064 .
?targetMotifMatchRegionMatchBeginMF_0096064 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096057 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096065 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096054, 1, (STRLEN(?templateMotifCigarQ57843MF_0096054) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096054, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ5784355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096056, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096056) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096056, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096056, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096056) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096056, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0096057) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096054, 1, (STRLEN(?templateMotifCigarQ57843MF_0096054) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096054, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionQ5784355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096056, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096056) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096056, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096056, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096056) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096056, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0096057) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('DHG[VIM][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ5784376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5784378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_0096071 .
?templateMotifSequenceMatchRegionQ5784376 faldo:begin ?templateMotifSequenceMatchBeginQ5784377 .
?templateMotifSequenceMatchBeginQ5784377 faldo:position ?templateMotifSequenceMatchBeginPositionQ5784372 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ5784378 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096082 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_0096073 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096081 .
?targetMotifMatchRegionMatchBeginMF_0096081 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096074 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096082 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096071, 1, (STRLEN(?templateMotifCigarQ57843MF_0096071) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096071, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionQ5784372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096073, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096073) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096073, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096073) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0096074) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096071, 1, (STRLEN(?templateMotifCigarQ57843MF_0096071) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096071, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ5784372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096073, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096073) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096073, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096073) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096073, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0096074) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ5784393 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5784395 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_0096088 .
?templateMotifSequenceMatchRegionQ5784393 faldo:begin ?templateMotifSequenceMatchBeginQ5784394 .
?templateMotifSequenceMatchBeginQ5784394 faldo:position ?templateMotifSequenceMatchBeginPositionQ5784389 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ5784395 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096099 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_0096090 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096098 .
?targetMotifMatchRegionMatchBeginMF_0096098 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096091 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096099 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096088, 1, (STRLEN(?templateMotifCigarQ57843MF_0096088) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096088, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionQ5784389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096090, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096090) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096090, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096090) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0096091) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_0096088, 1, (STRLEN(?templateMotifCigarQ57843MF_0096088) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_0096088, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionQ5784389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_0096090, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096090) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_0096090, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_0096090) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_0096090, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0096091) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'GG')) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ57843110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57843112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_00960105 .
?templateMotifSequenceMatchRegionQ57843110 faldo:begin ?templateMotifSequenceMatchBeginQ57843111 .
?templateMotifSequenceMatchBeginQ57843111 faldo:position ?templateMotifSequenceMatchBeginPositionQ57843106 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ57843112 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00960116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_00960107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00960115 .
?targetMotifMatchRegionMatchBeginMF_00960115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00960108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00960116 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_00960105, 1, (STRLEN(?templateMotifCigarQ57843MF_00960105) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_00960105, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionQ57843106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_00960107, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960107) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_00960107, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960107) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00960108) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_00960105, 1, (STRLEN(?templateMotifCigarQ57843MF_00960105) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_00960105, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionQ57843106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_00960107, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960107) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_00960107, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960107) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00960108) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'GR')) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ57843127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57843129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_00960122 .
?templateMotifSequenceMatchRegionQ57843127 faldo:begin ?templateMotifSequenceMatchBeginQ57843128 .
?templateMotifSequenceMatchBeginQ57843128 faldo:position ?templateMotifSequenceMatchBeginPositionQ57843123 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ57843129 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00960133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_00960124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00960132 .
?targetMotifMatchRegionMatchBeginMF_00960132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00960125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00960133 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_00960122, 1, (STRLEN(?templateMotifCigarQ57843MF_00960122) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_00960122, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ57843123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_00960124, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960124) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_00960124, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960124) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00960125) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ57843142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57843144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_00960137 .
?templateMotifSequenceMatchRegionQ57843142 faldo:begin ?templateMotifSequenceMatchBeginQ57843143 .
?templateMotifSequenceMatchBeginQ57843143 faldo:position ?templateMotifSequenceMatchBeginPositionQ57843138 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ57843144 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00960148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_00960139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00960147 .
?targetMotifMatchRegionMatchBeginMF_00960147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00960140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00960148 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_00960137, 1, (STRLEN(?templateMotifCigarQ57843MF_00960137) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_00960137, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionQ57843138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_00960139, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960139) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_00960139, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960139) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00960140) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ57843157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57843159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57843MF_00960152 .
?templateMotifSequenceMatchRegionQ57843157 faldo:begin ?templateMotifSequenceMatchBeginQ57843158 .
?templateMotifSequenceMatchBeginQ57843158 faldo:position ?templateMotifSequenceMatchBeginPositionQ57843153 ;
faldo:reference isoform:Q57843-1 .
?templateMotifSequenceProfileAlignmentOperationQ57843159 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00960163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57843MF_00960154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00960162 .
?targetMotifMatchRegionMatchBeginMF_00960162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00960155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00960163 edam:has_input signature:MF_00960 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57843MF_00960152, 1, (STRLEN(?templateMotifCigarQ57843MF_00960152) - STRLEN(REPLACE(?templateMotifCigarQ57843MF_00960152, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ57843153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57843MF_00960154, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960154) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57843MF_00960154, 1, (STRLEN(?targetMotifMatchCigarQ57843MF_00960154) - STRLEN(REPLACE(?targetMotifMatchCigarQ57843MF_00960154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00960155) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00960a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
}
"xsd:string |
