| http://purl.uniprot.org/unirules/MF_00994#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:347352 up:source unirule:MF_00994 .
_:347353 up:source unirule:MF_00994 .
_:347354 up:source unirule:MF_00994 .
_:347355 up:source unirule:MF_00994 .
_:347356 up:source unirule:MF_00994 .
_:347357 up:source unirule:MF_00994 .
_:347358 up:source unirule:MF_00994 .
_:347359 up:source unirule:MF_00994 .
_:347360 up:source unirule:MF_00994 .
_:347361 up:source unirule:MF_00994 .
_:347362 up:source unirule:MF_00994 .
_:347363 up:source unirule:MF_00994 .
_:347364 up:source unirule:MF_00994 .
_:347365 up:source unirule:MF_00994 .
_:347366 up:source unirule:MF_00994 .
_:347367 up:source unirule:MF_00994 .
_:347368 up:source unirule:MF_00994 .
_:347369 up:source unirule:MF_00994 .
_:347370 up:source unirule:MF_00994 .
_:347371 up:source unirule:MF_00994 .
_:347372 up:source unirule:MF_00994 .
_:347373 up:source unirule:MF_00994 .
_:347374 up:source unirule:MF_00994 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0009898 ,
GO:0046890 ,
keyword:1003 ,
keyword:1133 ,
keyword:472 ,
keyword:677 ,
keyword:802 ,
keyword:812 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Lipopolysaccharide assembly protein B' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'lapB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. Regulates the proteolytic activity of FtsH towards LpxC by acting as an adapter protein which interacts with FtsH via its transmembrane helices while its cytoplasmic domain recruits LpxC for degradation by FtsH. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LapB family.' .
?case6 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:479 .
?pfs7 up:annotation ?annotation8 ,
?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:24875 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:24875 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:24875 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:24875 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:347375 a rdf:Statement ;
up:attribution _:347352 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:347376 a rdf:Statement ;
up:attribution _:347353 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:347377 a rdf:Statement ;
up:attribution _:347354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:347378 a rdf:Statement ;
up:attribution _:347355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:347379 a rdf:Statement ;
up:attribution _:347356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:347380 a rdf:Statement ;
up:attribution _:347357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:347381 a rdf:Statement ;
up:attribution _:347358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:347382 a rdf:Statement ;
up:attribution _:347359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:347383 a rdf:Statement ;
up:attribution _:347360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:347384 a rdf:Statement ;
up:attribution _:347361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:802 .
_:347385 a rdf:Statement ;
up:attribution _:347362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:347386 a rdf:Statement ;
up:attribution _:347363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:347387 a rdf:Statement ;
up:attribution _:347364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046890 .
_:347388 a rdf:Statement ;
up:attribution _:347365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009898 .
_:347389 a rdf:Statement ;
up:attribution _:347366 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:347390 a rdf:Statement ;
up:attribution _:347367 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:347391 a rdf:Statement ;
up:attribution _:347368 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:347392 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:347393 a rdf:Statement ;
up:attribution _:347369 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:347394 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:347395 a rdf:Statement ;
up:attribution _:347370 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:347396 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:347397 a rdf:Statement ;
up:attribution _:347371 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:347398 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:347399 a rdf:Statement ;
up:attribution _:347372 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:347400 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:347401 a rdf:Statement ;
up:attribution _:347373 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:347402 a rdf:Statement ;
up:source unirule:MF_00994 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:347403 a rdf:Statement ;
up:attribution _:347374 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00994
#Rule MF_00994 Created by:? on:2014-02-14 Modified by:Catherine Rivoire on:2025-08-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00994 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00994a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00994a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00994a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00994a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP0AB5849 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB5851 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB58MF_0099444 .
?templateMotifSequenceMatchRegionP0AB5849 faldo:begin ?templateMotifSequenceMatchBeginP0AB5850 .
?templateMotifSequenceMatchBeginP0AB5850 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB5845 ;
faldo:reference isoform:P0AB58-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB5851 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099455 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB58MF_0099446 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099454 .
?targetMotifMatchRegionMatchBeginMF_0099454 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099447 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099455 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099444, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099444) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099444, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP0AB5845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0099447) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099444, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099444) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099444, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP0AB5845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0099447) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099444, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099444) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099444, CONCAT('^(?:-*[^-]){', STR(((371 - ?templateMotifSequenceMatchBeginPositionP0AB5845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0099447) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099444, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099444) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099444, CONCAT('^(?:-*[^-]){', STR(((374 - ?templateMotifSequenceMatchBeginPositionP0AB5845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099446, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099446) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0099447) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0AB5873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB5875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB58MF_0099468 .
?templateMotifSequenceMatchRegionP0AB5873 faldo:begin ?templateMotifSequenceMatchBeginP0AB5874 .
?templateMotifSequenceMatchBeginP0AB5874 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB5869 ;
faldo:reference isoform:P0AB58-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB5875 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB58MF_0099470 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099478 .
?targetMotifMatchRegionMatchBeginMF_0099478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099479 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099468, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099468) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099468, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP0AB5869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099470, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099470, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0099471) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099468, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099468) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099468, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP0AB5869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099470, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099470, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099470) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0099471) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_00994a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0AB5890 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB5892 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB58MF_0099485 .
?templateMotifSequenceMatchRegionP0AB5890 faldo:begin ?templateMotifSequenceMatchBeginP0AB5891 .
?templateMotifSequenceMatchBeginP0AB5891 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB5886 ;
faldo:reference isoform:P0AB58-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB5892 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099496 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB58MF_0099487 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099495 .
?targetMotifMatchRegionMatchBeginMF_0099495 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099488 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099496 edam:has_input signature:MF_00994 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB58MF_0099485, 1, (STRLEN(?templateMotifCigarP0AB58MF_0099485) - STRLEN(REPLACE(?templateMotifCigarP0AB58MF_0099485, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0AB5886) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099487, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099487) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB58MF_0099487, 1, (STRLEN(?targetMotifMatchCigarP0AB58MF_0099487) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB58MF_0099487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0099488) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_00994a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag100) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag100, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
