| http://purl.uniprot.org/unirules/MF_00997#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:348275 up:source unirule:MF_00997 .
_:348276 up:source unirule:MF_00997 .
_:348277 up:source unirule:MF_00997 .
_:348278 up:source unirule:MF_00997 .
_:348279 up:source unirule:MF_00997 .
_:348280 up:source unirule:MF_00997 .
_:348281 up:source unirule:MF_00997 .
_:348282 up:source unirule:MF_00997 .
_:348283 up:source unirule:MF_00997 .
_:348284 up:source unirule:MF_00997 .
_:348285 up:source unirule:MF_00997 .
_:348286 up:source unirule:MF_00997 .
_:348287 up:source unirule:MF_00997 .
_:348288 up:source unirule:MF_00997 .
_:348289 up:source unirule:MF_00997 .
_:348290 up:source unirule:MF_00997 .
_:348291 up:source unirule:MF_00997 .
_:348292 up:source unirule:MF_00997 .
_:348293 up:source unirule:MF_00997 .
_:348294 up:source unirule:MF_00997 .
_:348295 up:source unirule:MF_00997 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0008233 ,
GO:0042597 ,
keyword:378 ,
keyword:482 ,
keyword:574 ,
keyword:645 ,
keyword:732 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M48 family. BepA subfamily.' .
?case4 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?case5 up:recommendedName ?name6 .
?name6 up:ecName '3.4.-.-' ;
up:fullName 'Beta-barrel assembly-enhancing protease' ;
rdf:type up:Structured_Name .
?case7 up:recommendedName ?name8 .
?name8 up:ecName '3.4.-.-' ;
up:fullName 'Putative beta-barrel assembly-enhancing protease' ;
rdf:type up:Structured_Name .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29105 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29105 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:29105 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?sam40 up:classifiedWith keyword:732 .
?signal41 faldo:begin ?signalb42 ;
faldo:end ?signale43 .
?signalb42 faldo:position ?signalbp44 .
?signale43 faldo:position ?signalep45 .
?keyword46 up:range ?signal41 .
_:348296 a rdf:Statement ;
up:attribution _:348275 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:348297 a rdf:Statement ;
up:attribution _:348276 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:348298 a rdf:Statement ;
up:attribution _:348277 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:348299 a rdf:Statement ;
up:attribution _:348278 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:348300 a rdf:Statement ;
up:attribution _:348279 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:482 .
_:348301 a rdf:Statement ;
up:attribution _:348280 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:348302 a rdf:Statement ;
up:attribution _:348281 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:348303 a rdf:Statement ;
up:attribution _:348282 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:348304 a rdf:Statement ;
up:attribution _:348283 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008233 .
_:348305 a rdf:Statement ;
up:attribution _:348284 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:348306 a rdf:Statement ;
up:attribution _:348285 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:348307 a rdf:Statement ;
up:attribution _:348286 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:348308 a rdf:Statement ;
up:attribution _:348287 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:348309 a rdf:Statement ;
up:attribution _:348288 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:348310 a rdf:Statement ;
up:attribution _:348289 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:348311 a rdf:Statement ;
up:source unirule:MF_00997 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:348312 a rdf:Statement ;
up:attribution _:348290 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:348313 a rdf:Statement ;
up:source unirule:MF_00997 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:348314 a rdf:Statement ;
up:attribution _:348291 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:348315 a rdf:Statement ;
up:source unirule:MF_00997 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:348316 a rdf:Statement ;
up:attribution _:348292 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:348317 a rdf:Statement ;
up:source unirule:MF_00997 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:348318 a rdf:Statement ;
up:attribution _:348293 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:348319 a rdf:Statement ;
up:source unirule:MF_00997 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:348320 a rdf:Statement ;
up:attribution _:348294 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:348321 a rdf:Statement ;
up:attribution _:348295 ;
rdf:subject ?sam40 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00997
#Rule MF_00997 Created by:? on:2014-03-03 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00997 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_00997a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP6694852 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6694854 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP66948MF_0099747 .
?templateMotifSequenceMatchRegionP6694852 faldo:begin ?templateMotifSequenceMatchBeginP6694853 .
?templateMotifSequenceMatchBeginP6694853 faldo:position ?templateMotifSequenceMatchBeginPositionP6694848 ;
faldo:reference isoform:P66948-1 .
?templateMotifSequenceProfileAlignmentOperationP6694854 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099758 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP66948MF_0099749 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099757 .
?targetMotifMatchRegionMatchBeginMF_0099757 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099750 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099758 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP66948MF_0099747, 1, (STRLEN(?templateMotifCigarP66948MF_0099747) - STRLEN(REPLACE(?templateMotifCigarP66948MF_0099747, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP6694848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0099750) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP66948MF_0099747, 1, (STRLEN(?templateMotifCigarP66948MF_0099747) - STRLEN(REPLACE(?templateMotifCigarP66948MF_0099747, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP6694848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0099750) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP66948MF_0099747, 1, (STRLEN(?templateMotifCigarP66948MF_0099747) - STRLEN(REPLACE(?templateMotifCigarP66948MF_0099747, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP6694848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP66948MF_0099749, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099749) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0099750) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP6694873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6694875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP66948MF_0099768 .
?templateMotifSequenceMatchRegionP6694873 faldo:begin ?templateMotifSequenceMatchBeginP6694874 .
?templateMotifSequenceMatchBeginP6694874 faldo:position ?templateMotifSequenceMatchBeginPositionP6694869 ;
faldo:reference isoform:P66948-1 .
?templateMotifSequenceProfileAlignmentOperationP6694875 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP66948MF_0099770 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099778 .
?targetMotifMatchRegionMatchBeginMF_0099778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099779 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP66948MF_0099768, 1, (STRLEN(?templateMotifCigarP66948MF_0099768) - STRLEN(REPLACE(?templateMotifCigarP66948MF_0099768, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP6694869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP66948MF_0099770, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099770) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP66948MF_0099770, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099770) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0099771) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs2t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP6694888 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6694890 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP66948MF_0099783 .
?templateMotifSequenceMatchRegionP6694888 faldo:begin ?templateMotifSequenceMatchBeginP6694889 .
?templateMotifSequenceMatchBeginP6694889 faldo:position ?templateMotifSequenceMatchBeginPositionP6694884 ;
faldo:reference isoform:P66948-1 .
?templateMotifSequenceProfileAlignmentOperationP6694890 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099794 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP66948MF_0099785 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099793 .
?targetMotifMatchRegionMatchBeginMF_0099793 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099786 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099794 edam:has_input signature:MF_00997 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP66948MF_0099783, 1, (STRLEN(?templateMotifCigarP66948MF_0099783) - STRLEN(REPLACE(?templateMotifCigarP66948MF_0099783, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP6694884) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP66948MF_0099785, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099785) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP66948MF_0099785, 1, (STRLEN(?targetMotifMatchCigarP66948MF_0099785) - STRLEN(REPLACE(?targetMotifMatchCigarP66948MF_0099785, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0099786) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag98) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag98, ?UNBOUND_VARIABLE) AS ?case4) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a6')) AS ?name6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_00997a8')) AS ?name8) .
}
OPTIONAL {
?this up:annotation ?samsignal99 ;
up:sequence ?thisSequence .
?samsignal99 up:range ?samsignalr100 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr100 faldo:begin ?samsignalb101 ;
faldo:end ?samsignale102 .
?samsignalb101 faldo:position ?samsignalbp103 ;
faldo:reference ?thisSequence .
?samsignale102 faldo:position ?samsignalep104 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam40) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00997a46')) AS ?keyword46) .
}
"xsd:string |
