| http://purl.uniprot.org/unirules/MF_01007#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:351927 up:source unirule:MF_01007 .
_:351928 up:source unirule:MF_01007 .
_:351929 up:source unirule:MF_01007 .
_:351930 up:source unirule:MF_01007 .
_:351931 up:source unirule:MF_01007 .
_:351932 up:source unirule:MF_01007 .
_:351933 up:source unirule:MF_01007 .
_:351934 up:source unirule:MF_01007 .
_:351935 up:source unirule:MF_01007 .
_:351936 up:source unirule:MF_01007 .
_:351937 up:source unirule:MF_01007 .
_:351938 up:source unirule:MF_01007 .
_:351939 up:source unirule:MF_01007 .
_:351940 up:source unirule:MF_01007 .
_:351941 up:source unirule:MF_01007 .
_:351942 up:source unirule:MF_01007 .
_:351943 up:source unirule:MF_01007 .
_:351944 up:source unirule:MF_01007 .
_:351945 up:source unirule:MF_01007 .
_:351946 up:source unirule:MF_01007 .
_:351947 up:source unirule:MF_01007 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0070475 ,
GO:0071424 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.199' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase H' ;
rdf:type up:Structured_Name .
?name1 up:fullName '16S rRNA m(4)C1402 methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'rRNA (cytosine-N(4)-)-methyltransferase RsmH' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rsmH' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methyltransferase superfamily. RsmH family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:59789 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:59789 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:59789 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:59789 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:59789 .
_:351948 a rdf:Statement ;
up:attribution _:351927 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:351949 a rdf:Statement ;
up:attribution _:351928 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:351950 a rdf:Statement ;
up:attribution _:351929 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:351951 a rdf:Statement ;
up:attribution _:351930 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:351952 a rdf:Statement ;
up:attribution _:351931 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:351953 a rdf:Statement ;
up:attribution _:351932 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:351954 a rdf:Statement ;
up:attribution _:351933 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:351955 a rdf:Statement ;
up:attribution _:351934 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:351956 a rdf:Statement ;
up:attribution _:351935 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:351957 a rdf:Statement ;
up:attribution _:351936 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:351958 a rdf:Statement ;
up:attribution _:351937 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:351959 a rdf:Statement ;
up:attribution _:351938 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:351960 a rdf:Statement ;
up:attribution _:351939 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:351961 a rdf:Statement ;
up:attribution _:351940 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071424 .
_:351962 a rdf:Statement ;
up:attribution _:351941 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070475 .
_:351963 a rdf:Statement ;
up:attribution _:351942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:351964 a rdf:Statement ;
up:source unirule:MF_01007 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:351965 a rdf:Statement ;
up:attribution _:351943 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:351966 a rdf:Statement ;
up:source unirule:MF_01007 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:351967 a rdf:Statement ;
up:attribution _:351944 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:351968 a rdf:Statement ;
up:source unirule:MF_01007 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:351969 a rdf:Statement ;
up:attribution _:351945 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:351970 a rdf:Statement ;
up:source unirule:MF_01007 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:351971 a rdf:Statement ;
up:attribution _:351946 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:351972 a rdf:Statement ;
up:source unirule:MF_01007 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:351973 a rdf:Statement ;
up:attribution _:351947 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01007
#Rule MF_01007 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01007 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01007a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionQ9WZX650 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WZX652 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WZX6MF_0100745 .
?templateMotifSequenceMatchRegionQ9WZX650 faldo:begin ?templateMotifSequenceMatchBeginQ9WZX651 .
?templateMotifSequenceMatchBeginQ9WZX651 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WZX646 ;
faldo:reference isoform:Q9WZX6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WZX652 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0100756 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WZX6MF_0100747 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0100755 .
?targetMotifMatchRegionMatchBeginMF_0100755 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0100748 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0100756 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_0100745, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_0100745) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_0100745, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionQ9WZX646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100747, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100747) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100747, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100747) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0100748) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_0100745, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_0100745) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_0100745, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionQ9WZX646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100747, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100747) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100747, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100747) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100747, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0100748) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('[GASC][GSVA][HY]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionQ9WZX667 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WZX669 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WZX6MF_0100762 .
?templateMotifSequenceMatchRegionQ9WZX667 faldo:begin ?templateMotifSequenceMatchBeginQ9WZX668 .
?templateMotifSequenceMatchBeginQ9WZX668 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WZX663 ;
faldo:reference isoform:Q9WZX6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WZX669 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0100773 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WZX6MF_0100764 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0100772 .
?targetMotifMatchRegionMatchBeginMF_0100772 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0100765 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0100773 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_0100762, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_0100762) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_0100762, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ9WZX663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100764, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100764) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100764, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100764) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0100765) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ9WZX682 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WZX684 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WZX6MF_0100777 .
?templateMotifSequenceMatchRegionQ9WZX682 faldo:begin ?templateMotifSequenceMatchBeginQ9WZX683 .
?templateMotifSequenceMatchBeginQ9WZX683 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WZX678 ;
faldo:reference isoform:Q9WZX6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WZX684 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0100788 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WZX6MF_0100779 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0100787 .
?targetMotifMatchRegionMatchBeginMF_0100787 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0100780 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0100788 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_0100777, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_0100777) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_0100777, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9WZX678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100779, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100779) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100779, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100779) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0100780) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[FYHILA]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ9WZX697 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WZX699 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WZX6MF_0100792 .
?templateMotifSequenceMatchRegionQ9WZX697 faldo:begin ?templateMotifSequenceMatchBeginQ9WZX698 .
?templateMotifSequenceMatchBeginQ9WZX698 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WZX693 ;
faldo:reference isoform:Q9WZX6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WZX699 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01007103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WZX6MF_0100794 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01007102 .
?targetMotifMatchRegionMatchBeginMF_01007102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0100795 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01007103 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_0100792, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_0100792) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_0100792, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ9WZX693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100794, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100794) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_0100794, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_0100794) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_0100794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0100795) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionQ9WZX6112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WZX6114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WZX6MF_01007107 .
?templateMotifSequenceMatchRegionQ9WZX6112 faldo:begin ?templateMotifSequenceMatchBeginQ9WZX6113 .
?templateMotifSequenceMatchBeginQ9WZX6113 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WZX6108 ;
faldo:reference isoform:Q9WZX6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WZX6114 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01007118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WZX6MF_01007109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01007117 .
?targetMotifMatchRegionMatchBeginMF_01007117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01007110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01007118 edam:has_input signature:MF_01007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WZX6MF_01007107, 1, (STRLEN(?templateMotifCigarQ9WZX6MF_01007107) - STRLEN(REPLACE(?templateMotifCigarQ9WZX6MF_01007107, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ9WZX6108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_01007109, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_01007109) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_01007109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WZX6MF_01007109, 1, (STRLEN(?targetMotifMatchCigarQ9WZX6MF_01007109) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WZX6MF_01007109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01007110) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[QH]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01007a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
}
"xsd:string |
