| http://purl.uniprot.org/unirules/MF_01026#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:360061 up:source unirule:MF_01026 .
_:360062 up:source unirule:MF_01026 .
_:360063 up:source unirule:MF_01026 .
_:360064 up:source unirule:MF_01026 .
_:360065 up:source unirule:MF_01026 .
_:360066 up:source unirule:MF_01026 .
_:360067 up:source unirule:MF_01026 .
_:360068 up:source unirule:MF_01026 .
_:360069 up:source unirule:MF_01026 .
_:360070 up:source unirule:MF_01026 .
_:360071 up:source unirule:MF_01026 .
_:360072 up:source unirule:MF_01026 .
_:360073 up:source unirule:MF_01026 .
_:360074 up:source unirule:MF_01026 .
_:360075 up:source unirule:MF_01026 .
_:360076 up:source unirule:MF_01026 .
_:360077 up:source unirule:MF_01026 .
_:360078 up:source unirule:MF_01026 .
_:360079 up:source unirule:MF_01026 .
_:360080 up:source unirule:MF_01026 .
_:360081 up:source unirule:MF_01026 .
_:360082 up:source unirule:MF_01026 .
_:360083 up:source unirule:MF_01026 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003861 ,
GO:0009098 ,
keyword:100 ,
keyword:28 ,
keyword:408 ,
keyword:411 ,
keyword:432 ,
keyword:456 ,
keyword:479 ,
keyword:4 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.33' ;
up:fullName '3-isopropylmalate dehydratase large subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Alpha-IPM isomerase' ;
up:shortName 'IPMI' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Isopropylmalate isomerase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'leuC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of LeuC and LeuD.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:49883 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:49883 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:49883 .
_:360084 a rdf:Statement ;
up:attribution _:360061 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:360085 a rdf:Statement ;
up:attribution _:360062 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:360086 a rdf:Statement ;
up:attribution _:360063 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:360087 a rdf:Statement ;
up:attribution _:360064 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:360088 a rdf:Statement ;
up:attribution _:360065 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:360089 a rdf:Statement ;
up:attribution _:360066 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:360090 a rdf:Statement ;
up:attribution _:360067 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:360091 a rdf:Statement ;
up:attribution _:360068 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:360092 a rdf:Statement ;
up:attribution _:360069 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:360093 a rdf:Statement ;
up:attribution _:360070 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:360094 a rdf:Statement ;
up:attribution _:360071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:360095 a rdf:Statement ;
up:attribution _:360072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:100 .
_:360096 a rdf:Statement ;
up:attribution _:360073 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:432 .
_:360097 a rdf:Statement ;
up:attribution _:360074 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:360098 a rdf:Statement ;
up:attribution _:360075 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:360099 a rdf:Statement ;
up:attribution _:360076 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:360100 a rdf:Statement ;
up:attribution _:360077 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:360101 a rdf:Statement ;
up:attribution _:360078 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:360102 a rdf:Statement ;
up:attribution _:360079 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003861 .
_:360103 a rdf:Statement ;
up:attribution _:360080 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009098 .
_:360104 a rdf:Statement ;
up:source unirule:MF_01026 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:360105 a rdf:Statement ;
up:attribution _:360081 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:360106 a rdf:Statement ;
up:source unirule:MF_01026 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:360107 a rdf:Statement ;
up:attribution _:360082 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:360108 a rdf:Statement ;
up:source unirule:MF_01026 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:360109 a rdf:Statement ;
up:attribution _:360083 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01026
#Rule MF_01026 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-04-25
VALUES ?supertaxon32 {taxon:2 taxon:183963}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01026 .
?thisOrganism rdfs:subClassOf+ ?supertaxon32 .
BIND(URI(CONCAT(STR(?this), '#MF_01026a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP0A6A638 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A640 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6A6MF_0102633 .
?templateMotifSequenceMatchRegionP0A6A638 faldo:begin ?templateMotifSequenceMatchBeginP0A6A639 .
?templateMotifSequenceMatchBeginP0A6A639 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A634 ;
faldo:reference isoform:P0A6A6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6A640 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102644 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6A6MF_0102635 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102643 .
?targetMotifMatchRegionMatchBeginMF_0102643 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102636 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102644 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A6MF_0102633, 1, (STRLEN(?templateMotifCigarP0A6A6MF_0102633) - STRLEN(REPLACE(?templateMotifCigarP0A6A6MF_0102633, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionP0A6A634) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102635, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102635) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102635, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102635, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102635) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102635, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0102636) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP0A6A653 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A655 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6A6MF_0102648 .
?templateMotifSequenceMatchRegionP0A6A653 faldo:begin ?templateMotifSequenceMatchBeginP0A6A654 .
?templateMotifSequenceMatchBeginP0A6A654 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A649 ;
faldo:reference isoform:P0A6A6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6A655 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102659 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6A6MF_0102650 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102658 .
?targetMotifMatchRegionMatchBeginMF_0102658 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102651 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102659 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A6MF_0102648, 1, (STRLEN(?templateMotifCigarP0A6A6MF_0102648) - STRLEN(REPLACE(?templateMotifCigarP0A6A6MF_0102648, CONCAT('^(?:-*[^-]){', STR(((407 - ?templateMotifSequenceMatchBeginPositionP0A6A649) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102650, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102650) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102650, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102650) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0102651) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0A6A668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6A6MF_0102663 .
?templateMotifSequenceMatchRegionP0A6A668 faldo:begin ?templateMotifSequenceMatchBeginP0A6A669 .
?templateMotifSequenceMatchBeginP0A6A669 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A664 ;
faldo:reference isoform:P0A6A6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6A670 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102674 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6A6MF_0102665 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102673 .
?targetMotifMatchRegionMatchBeginMF_0102673 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102666 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102674 edam:has_input signature:MF_01026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A6MF_0102663, 1, (STRLEN(?templateMotifCigarP0A6A6MF_0102663) - STRLEN(REPLACE(?templateMotifCigarP0A6A6MF_0102663, CONCAT('^(?:-*[^-]){', STR(((410 - ?templateMotifSequenceMatchBeginPositionP0A6A664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102665, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102665) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A6MF_0102665, 1, (STRLEN(?targetMotifMatchCigarP0A6A6MF_0102665) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A6MF_0102665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0102666) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01026a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
}
"xsd:string |
