| http://purl.uniprot.org/unirules/MF_01027#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:360499 up:source unirule:MF_01027 .
_:360500 up:source unirule:MF_01027 .
_:360501 up:source unirule:MF_01027 .
_:360502 up:source unirule:MF_01027 .
_:360503 up:source unirule:MF_01027 .
_:360504 up:source unirule:MF_01027 .
_:360505 up:source unirule:MF_01027 .
_:360506 up:source unirule:MF_01027 .
_:360507 up:source unirule:MF_01027 .
_:360508 up:source unirule:MF_01027 .
_:360509 up:source unirule:MF_01027 .
_:360510 up:source unirule:MF_01027 .
_:360511 up:source unirule:MF_01027 .
_:360512 up:source unirule:MF_01027 .
_:360513 up:source unirule:MF_01027 .
_:360514 up:source unirule:MF_01027 .
_:360515 up:source unirule:MF_01027 .
_:360516 up:source unirule:MF_01027 .
_:360517 up:source unirule:MF_01027 .
_:360518 up:source unirule:MF_01027 .
_:360519 up:source unirule:MF_01027 .
_:360520 up:source unirule:MF_01027 .
_:360521 up:source unirule:MF_01027 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003861 ,
GO:0009098 ,
keyword:100 ,
keyword:28 ,
keyword:408 ,
keyword:411 ,
keyword:432 ,
keyword:456 ,
keyword:479 ,
keyword:4 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.33' ;
up:fullName '3-isopropylmalate dehydratase large subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Alpha-IPM isomerase' ;
up:shortName 'IPMI' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Isopropylmalate isomerase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'leuC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of LeuC and LeuD.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:49883 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:49883 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:49883 .
_:360522 a rdf:Statement ;
up:attribution _:360499 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:360523 a rdf:Statement ;
up:attribution _:360500 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:360524 a rdf:Statement ;
up:attribution _:360501 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:360525 a rdf:Statement ;
up:attribution _:360502 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:360526 a rdf:Statement ;
up:attribution _:360503 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:360527 a rdf:Statement ;
up:attribution _:360504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:360528 a rdf:Statement ;
up:attribution _:360505 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:360529 a rdf:Statement ;
up:attribution _:360506 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:360530 a rdf:Statement ;
up:attribution _:360507 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:360531 a rdf:Statement ;
up:attribution _:360508 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:360532 a rdf:Statement ;
up:attribution _:360509 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:360533 a rdf:Statement ;
up:attribution _:360510 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:100 .
_:360534 a rdf:Statement ;
up:attribution _:360511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:432 .
_:360535 a rdf:Statement ;
up:attribution _:360512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:360536 a rdf:Statement ;
up:attribution _:360513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:360537 a rdf:Statement ;
up:attribution _:360514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:360538 a rdf:Statement ;
up:attribution _:360515 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:360539 a rdf:Statement ;
up:attribution _:360516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:360540 a rdf:Statement ;
up:attribution _:360517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003861 .
_:360541 a rdf:Statement ;
up:attribution _:360518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009098 .
_:360542 a rdf:Statement ;
up:source unirule:MF_01027 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:360543 a rdf:Statement ;
up:attribution _:360519 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:360544 a rdf:Statement ;
up:source unirule:MF_01027 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:360545 a rdf:Statement ;
up:attribution _:360520 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:360546 a rdf:Statement ;
up:source unirule:MF_01027 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:360547 a rdf:Statement ;
up:attribution _:360521 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01027
#Rule MF_01027 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-04-25
VALUES ?supertaxon32 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01027 .
?thisOrganism rdfs:subClassOf+ ?supertaxon32 .
BIND(URI(CONCAT(STR(?this), '#MF_01027a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionO6707838 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6707840 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67078MF_0102733 .
?templateMotifSequenceMatchRegionO6707838 faldo:begin ?templateMotifSequenceMatchBeginO6707839 .
?templateMotifSequenceMatchBeginO6707839 faldo:position ?templateMotifSequenceMatchBeginPositionO6707834 ;
faldo:reference isoform:O67078-1 .
?templateMotifSequenceProfileAlignmentOperationO6707840 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102744 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67078MF_0102735 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102743 .
?targetMotifMatchRegionMatchBeginMF_0102743 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102736 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102744 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67078MF_0102733, 1, (STRLEN(?templateMotifCigarO67078MF_0102733) - STRLEN(REPLACE(?templateMotifCigarO67078MF_0102733, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionO6707834) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67078MF_0102735, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102735) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67078MF_0102735, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102735) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0102736) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionO6707853 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6707855 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67078MF_0102748 .
?templateMotifSequenceMatchRegionO6707853 faldo:begin ?templateMotifSequenceMatchBeginO6707854 .
?templateMotifSequenceMatchBeginO6707854 faldo:position ?templateMotifSequenceMatchBeginPositionO6707849 ;
faldo:reference isoform:O67078-1 .
?templateMotifSequenceProfileAlignmentOperationO6707855 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102759 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67078MF_0102750 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102758 .
?targetMotifMatchRegionMatchBeginMF_0102758 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102751 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102759 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67078MF_0102748, 1, (STRLEN(?templateMotifCigarO67078MF_0102748) - STRLEN(REPLACE(?templateMotifCigarO67078MF_0102748, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionO6707849) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67078MF_0102750, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102750) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67078MF_0102750, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102750) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0102751) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionO6707868 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6707870 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67078MF_0102763 .
?templateMotifSequenceMatchRegionO6707868 faldo:begin ?templateMotifSequenceMatchBeginO6707869 .
?templateMotifSequenceMatchBeginO6707869 faldo:position ?templateMotifSequenceMatchBeginPositionO6707864 ;
faldo:reference isoform:O67078-1 .
?templateMotifSequenceProfileAlignmentOperationO6707870 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0102774 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67078MF_0102765 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0102773 .
?targetMotifMatchRegionMatchBeginMF_0102773 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0102766 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0102774 edam:has_input signature:MF_01027 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67078MF_0102763, 1, (STRLEN(?templateMotifCigarO67078MF_0102763) - STRLEN(REPLACE(?templateMotifCigarO67078MF_0102763, CONCAT('^(?:-*[^-]){', STR(((367 - ?templateMotifSequenceMatchBeginPositionO6707864) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67078MF_0102765, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102765) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67078MF_0102765, 1, (STRLEN(?targetMotifMatchCigarO67078MF_0102765) - STRLEN(REPLACE(?targetMotifMatchCigarO67078MF_0102765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0102766) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01027a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
}
"xsd:string |
