| http://purl.uniprot.org/unirules/MF_01080#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:376199 up:source unirule:MF_01080 .
_:376200 up:source unirule:MF_01080 .
_:376201 up:source unirule:MF_01080 .
_:376202 up:source unirule:MF_01080 .
_:376203 up:source unirule:MF_01080 .
_:376204 up:source unirule:MF_01080 .
_:376205 up:source unirule:MF_01080 .
_:376206 up:source unirule:MF_01080 .
_:376207 up:source unirule:MF_01080 .
_:376208 up:source unirule:MF_01080 .
_:376209 up:source unirule:MF_01080 .
_:376210 up:source unirule:MF_01080 .
_:376211 up:source unirule:MF_01080 .
_:376212 up:source unirule:MF_01080 .
_:376213 up:source unirule:MF_01080 .
_:376214 up:source unirule:MF_01080 .
_:376215 up:source unirule:MF_01080 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0009982 ,
GO:0031119 ,
keyword:413 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.99.25' ;
up:fullName 'tRNA pseudouridine synthase B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA pseudouridine(55) synthase' ;
up:shortName 'Psi55 synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA pseudouridylate synthase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'tRNA-uridine isomerase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'truB' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
_:376216 a rdf:Statement ;
up:attribution _:376199 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:376217 a rdf:Statement ;
up:attribution _:376200 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:376218 a rdf:Statement ;
up:attribution _:376201 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:376219 a rdf:Statement ;
up:attribution _:376202 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:376220 a rdf:Statement ;
up:attribution _:376203 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:376221 a rdf:Statement ;
up:attribution _:376204 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:376222 a rdf:Statement ;
up:attribution _:376205 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:376223 a rdf:Statement ;
up:attribution _:376206 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:376224 a rdf:Statement ;
up:attribution _:376207 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:376225 a rdf:Statement ;
up:attribution _:376208 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:376226 a rdf:Statement ;
up:attribution _:376209 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009982 .
_:376227 a rdf:Statement ;
up:attribution _:376210 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031119 .
_:376228 a rdf:Statement ;
up:source unirule:MF_01080 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:376229 a rdf:Statement ;
up:attribution _:376211 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:376230 a rdf:Statement ;
up:source unirule:MF_01080 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:376231 a rdf:Statement ;
up:attribution _:376212 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:376232 a rdf:Statement ;
up:source unirule:MF_01080 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:376233 a rdf:Statement ;
up:attribution _:376213 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:376234 a rdf:Statement ;
up:source unirule:MF_01080 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:376235 a rdf:Statement ;
up:attribution _:376214 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:376236 a rdf:Statement ;
up:source unirule:MF_01080 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:376237 a rdf:Statement ;
up:attribution _:376215 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01080
#Rule MF_01080 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01080 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01080a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP6034052 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6034054 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60340MF_0108047 .
?templateMotifSequenceMatchRegionP6034052 faldo:begin ?templateMotifSequenceMatchBeginP6034053 .
?templateMotifSequenceMatchBeginP6034053 faldo:position ?templateMotifSequenceMatchBeginPositionP6034048 ;
faldo:reference isoform:P60340-1 .
?templateMotifSequenceProfileAlignmentOperationP6034054 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108058 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60340MF_0108049 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108057 .
?targetMotifMatchRegionMatchBeginMF_0108057 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108050 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108058 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60340MF_0108047, 1, (STRLEN(?templateMotifCigarP60340MF_0108047) - STRLEN(REPLACE(?templateMotifCigarP60340MF_0108047, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP6034048) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60340MF_0108049, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108049) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108049, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60340MF_0108049, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108049) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108049, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0108050) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP6034067 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6034069 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60340MF_0108062 .
?templateMotifSequenceMatchRegionP6034067 faldo:begin ?templateMotifSequenceMatchBeginP6034068 .
?templateMotifSequenceMatchBeginP6034068 faldo:position ?templateMotifSequenceMatchBeginPositionP6034063 ;
faldo:reference isoform:P60340-1 .
?templateMotifSequenceProfileAlignmentOperationP6034069 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108073 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60340MF_0108064 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108072 .
?targetMotifMatchRegionMatchBeginMF_0108072 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108065 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108073 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60340MF_0108062, 1, (STRLEN(?templateMotifCigarP60340MF_0108062) - STRLEN(REPLACE(?templateMotifCigarP60340MF_0108062, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP6034063) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60340MF_0108064, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108064) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60340MF_0108064, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108064) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0108065) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP6034082 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6034084 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60340MF_0108077 .
?templateMotifSequenceMatchRegionP6034082 faldo:begin ?templateMotifSequenceMatchBeginP6034083 .
?templateMotifSequenceMatchBeginP6034083 faldo:position ?templateMotifSequenceMatchBeginPositionP6034078 ;
faldo:reference isoform:P60340-1 .
?templateMotifSequenceProfileAlignmentOperationP6034084 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0108088 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60340MF_0108079 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0108087 .
?targetMotifMatchRegionMatchBeginMF_0108087 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108080 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0108088 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60340MF_0108077, 1, (STRLEN(?templateMotifCigarP60340MF_0108077) - STRLEN(REPLACE(?templateMotifCigarP60340MF_0108077, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP6034078) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60340MF_0108079, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108079) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60340MF_0108079, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108079) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0108080) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP6034097 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6034099 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60340MF_0108092 .
?templateMotifSequenceMatchRegionP6034097 faldo:begin ?templateMotifSequenceMatchBeginP6034098 .
?templateMotifSequenceMatchBeginP6034098 faldo:position ?templateMotifSequenceMatchBeginPositionP6034093 ;
faldo:reference isoform:P60340-1 .
?templateMotifSequenceProfileAlignmentOperationP6034099 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01080103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60340MF_0108094 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01080102 .
?targetMotifMatchRegionMatchBeginMF_01080102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0108095 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01080103 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60340MF_0108092, 1, (STRLEN(?templateMotifCigarP60340MF_0108092) - STRLEN(REPLACE(?templateMotifCigarP60340MF_0108092, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP6034093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60340MF_0108094, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108094) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60340MF_0108094, 1, (STRLEN(?targetMotifMatchCigarP60340MF_0108094) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_0108094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0108095) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP60340112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60340114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP60340MF_01080107 .
?templateMotifSequenceMatchRegionP60340112 faldo:begin ?templateMotifSequenceMatchBeginP60340113 .
?templateMotifSequenceMatchBeginP60340113 faldo:position ?templateMotifSequenceMatchBeginPositionP60340108 ;
faldo:reference isoform:P60340-1 .
?templateMotifSequenceProfileAlignmentOperationP60340114 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01080118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP60340MF_01080109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01080117 .
?targetMotifMatchRegionMatchBeginMF_01080117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01080110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01080118 edam:has_input signature:MF_01080 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60340MF_01080107, 1, (STRLEN(?templateMotifCigarP60340MF_01080107) - STRLEN(REPLACE(?templateMotifCigarP60340MF_01080107, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP60340108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60340MF_01080109, 1, (STRLEN(?targetMotifMatchCigarP60340MF_01080109) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_01080109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60340MF_01080109, 1, (STRLEN(?targetMotifMatchCigarP60340MF_01080109) - STRLEN(REPLACE(?targetMotifMatchCigarP60340MF_01080109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01080110) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_01080a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
}
"xsd:string |
