| http://purl.uniprot.org/unirules/MF_01113#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:387158 up:source unirule:MF_01113 .
_:387159 up:source unirule:MF_01113 .
_:387160 up:source unirule:MF_01113 .
_:387161 up:source unirule:MF_01113 .
_:387162 up:source unirule:MF_01113 .
_:387163 up:source unirule:MF_01113 .
_:387164 up:source unirule:MF_01113 .
_:387165 up:source unirule:MF_01113 .
_:387166 up:source unirule:MF_01113 .
_:387167 up:source unirule:MF_01113 .
_:387168 up:source unirule:MF_01113 .
_:387169 up:source unirule:MF_01113 .
_:387170 up:source unirule:MF_01113 .
_:387171 up:source unirule:MF_01113 .
_:387172 up:source unirule:MF_01113 .
_:387173 up:source unirule:MF_01113 .
_:387174 up:source unirule:MF_01113 .
_:387175 up:source unirule:MF_01113 .
_:387176 up:source unirule:MF_01113 .
_:387177 up:source unirule:MF_01113 .
_:387178 up:source unirule:MF_01113 .
_:387179 up:source unirule:MF_01113 .
_:387180 up:source unirule:MF_01113 .
_:387181 up:source unirule:MF_01113 .
_:387182 up:source unirule:MF_01113 .
_:387183 up:source unirule:MF_01113 .
_:387184 up:source unirule:MF_01113 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0003677 ,
GO:0003887 ,
GO:0005737 ,
GO:0006261 ,
GO:0006281 ,
keyword:227 ,
keyword:234 ,
keyword:235 ,
keyword:238 ,
keyword:239 ,
keyword:460 ,
keyword:479 ,
keyword:515 ,
keyword:548 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.7' ;
up:fullName 'DNA polymerase IV' ;
up:shortName 'Pol IV' ;
rdf:type up:Structured_Name .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium ions per subunit.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DNA polymerase type-Y family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate discrimination' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:18420 .
_:387185 a rdf:Statement ;
up:attribution _:387158 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:387186 a rdf:Statement ;
up:attribution _:387159 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:387187 a rdf:Statement ;
up:attribution _:387160 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:387188 a rdf:Statement ;
up:attribution _:387161 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:387189 a rdf:Statement ;
up:attribution _:387162 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:387190 a rdf:Statement ;
up:attribution _:387163 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:387191 a rdf:Statement ;
up:attribution _:387164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:387192 a rdf:Statement ;
up:attribution _:387165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:387193 a rdf:Statement ;
up:attribution _:387166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:387194 a rdf:Statement ;
up:attribution _:387167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:239 .
_:387195 a rdf:Statement ;
up:attribution _:387168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:387196 a rdf:Statement ;
up:attribution _:387169 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:387197 a rdf:Statement ;
up:attribution _:387170 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:387198 a rdf:Statement ;
up:attribution _:387171 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:387199 a rdf:Statement ;
up:attribution _:387172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:515 .
_:387200 a rdf:Statement ;
up:attribution _:387173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:387201 a rdf:Statement ;
up:attribution _:387174 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:387202 a rdf:Statement ;
up:attribution _:387175 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:387203 a rdf:Statement ;
up:attribution _:387176 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003887 .
_:387204 a rdf:Statement ;
up:attribution _:387177 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:387205 a rdf:Statement ;
up:attribution _:387178 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006261 .
_:387206 a rdf:Statement ;
up:attribution _:387179 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:387207 a rdf:Statement ;
up:attribution _:387180 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:387208 a rdf:Statement ;
up:source unirule:MF_01113 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:387209 a rdf:Statement ;
up:attribution _:387181 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:387210 a rdf:Statement ;
up:source unirule:MF_01113 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:387211 a rdf:Statement ;
up:attribution _:387182 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:387212 a rdf:Statement ;
up:source unirule:MF_01113 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:387213 a rdf:Statement ;
up:attribution _:387183 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:387214 a rdf:Statement ;
up:source unirule:MF_01113 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:387215 a rdf:Statement ;
up:attribution _:387184 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01113
#Rule MF_01113 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon36 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01113 .
?thisOrganism rdfs:subClassOf+ ?supertaxon36 .
BIND(URI(CONCAT(STR(?this), '#MF_01113a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP9602242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9602244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP96022MF_0111337 .
?templateMotifSequenceMatchRegionP9602242 faldo:begin ?templateMotifSequenceMatchBeginP9602243 .
?templateMotifSequenceMatchBeginP9602243 faldo:position ?templateMotifSequenceMatchBeginPositionP9602238 ;
faldo:reference isoform:P96022-1 .
?templateMotifSequenceProfileAlignmentOperationP9602244 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP96022MF_0111339 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111347 .
?targetMotifMatchRegionMatchBeginMF_0111347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0111348 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP96022MF_0111337, 1, (STRLEN(?templateMotifCigarP96022MF_0111337) - STRLEN(REPLACE(?templateMotifCigarP96022MF_0111337, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP9602238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP96022MF_0111339, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111339) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP96022MF_0111339, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111339) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0111340) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (BOUND(?thisPositionOn14)) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP9602257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9602259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP96022MF_0111352 .
?templateMotifSequenceMatchRegionP9602257 faldo:begin ?templateMotifSequenceMatchBeginP9602258 .
?templateMotifSequenceMatchBeginP9602258 faldo:position ?templateMotifSequenceMatchBeginPositionP9602253 ;
faldo:reference isoform:P96022-1 .
?templateMotifSequenceProfileAlignmentOperationP9602259 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP96022MF_0111354 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111362 .
?targetMotifMatchRegionMatchBeginMF_0111362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0111363 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP96022MF_0111352, 1, (STRLEN(?templateMotifCigarP96022MF_0111352) - STRLEN(REPLACE(?templateMotifCigarP96022MF_0111352, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP9602253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP96022MF_0111354, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111354) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP96022MF_0111354, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111354) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0111355) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP9602272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9602274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP96022MF_0111367 .
?templateMotifSequenceMatchRegionP9602272 faldo:begin ?templateMotifSequenceMatchBeginP9602273 .
?templateMotifSequenceMatchBeginP9602273 faldo:position ?templateMotifSequenceMatchBeginPositionP9602268 ;
faldo:reference isoform:P96022-1 .
?templateMotifSequenceProfileAlignmentOperationP9602274 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP96022MF_0111369 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111377 .
?targetMotifMatchRegionMatchBeginMF_0111377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0111378 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP96022MF_0111367, 1, (STRLEN(?templateMotifCigarP96022MF_0111367) - STRLEN(REPLACE(?templateMotifCigarP96022MF_0111367, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP9602268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP96022MF_0111369, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111369) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP96022MF_0111369, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111369) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0111370) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP9602287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9602289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP96022MF_0111382 .
?templateMotifSequenceMatchRegionP9602287 faldo:begin ?templateMotifSequenceMatchBeginP9602288 .
?templateMotifSequenceMatchBeginP9602288 faldo:position ?templateMotifSequenceMatchBeginPositionP9602283 ;
faldo:reference isoform:P96022-1 .
?templateMotifSequenceProfileAlignmentOperationP9602289 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP96022MF_0111384 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111392 .
?targetMotifMatchRegionMatchBeginMF_0111392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0111393 edam:has_input signature:MF_01113 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP96022MF_0111382, 1, (STRLEN(?templateMotifCigarP96022MF_0111382) - STRLEN(REPLACE(?templateMotifCigarP96022MF_0111382, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP9602283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP96022MF_0111384, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111384) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP96022MF_0111384, 1, (STRLEN(?targetMotifMatchCigarP96022MF_0111384) - STRLEN(REPLACE(?targetMotifMatchCigarP96022MF_0111384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0111385) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01113a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
