| http://purl.uniprot.org/unirules/MF_01138#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:397617 up:source unirule:MF_01138 .
_:397618 up:source unirule:MF_01138 .
_:397619 up:source unirule:MF_01138 .
_:397620 up:source unirule:MF_01138 .
_:397621 up:source unirule:MF_01138 .
_:397622 up:source unirule:MF_01138 .
_:397623 up:source unirule:MF_01138 .
_:397624 up:source unirule:MF_01138 .
_:397625 up:source unirule:MF_01138 .
_:397626 up:source unirule:MF_01138 .
_:397627 up:source unirule:MF_01138 .
_:397628 up:source unirule:MF_01138 .
_:397629 up:source unirule:MF_01138 .
_:397630 up:source unirule:MF_01138 .
_:397631 up:source unirule:MF_01138 .
_:397632 up:source unirule:MF_01138 .
_:397633 up:source unirule:MF_01138 .
_:397634 up:source unirule:MF_01138 .
_:397635 up:source unirule:MF_01138 .
_:397636 up:source unirule:MF_01138 .
_:397637 up:source unirule:MF_01138 .
_:397638 up:source unirule:MF_01138 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016407 ,
keyword:12 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.169' ;
up:fullName 'Acetyl-CoA decarbonylase/synthase complex subunit beta' ;
up:shortName 'ACDS complex subunit beta' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ACDS complex acyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cdhC' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:60400 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [Ni-Fe-S] cluster.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Monomer. The ACDS complex is made up of alpha, epsilon, beta, gamma and delta chains with a probable stoichiometry of (alpha(2)epsilon(2))(4)-beta(8)-(gamma(1)delta(1))(8).' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CdhC family.' .
?case8 up:classifiedWith GO:0005506 ,
GO:0016151 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:533 .
?case9 up:classifiedWith GO:0019385 ,
keyword:484 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:60400 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:60400 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:60400 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:60400 .
_:397639 a rdf:Statement ;
up:attribution _:397617 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:397640 a rdf:Statement ;
up:attribution _:397618 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:397641 a rdf:Statement ;
up:attribution _:397619 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:397642 a rdf:Statement ;
up:attribution _:397620 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:397643 a rdf:Statement ;
up:attribution _:397621 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:397644 a rdf:Statement ;
up:attribution _:397622 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:397645 a rdf:Statement ;
up:attribution _:397623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:397646 a rdf:Statement ;
up:attribution _:397624 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:397647 a rdf:Statement ;
up:attribution _:397625 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:397648 a rdf:Statement ;
up:attribution _:397626 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016407 .
_:397649 a rdf:Statement ;
up:attribution _:397627 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:397650 a rdf:Statement ;
up:attribution _:397628 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:397651 a rdf:Statement ;
up:attribution _:397629 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:533 .
_:397652 a rdf:Statement ;
up:attribution _:397630 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:397653 a rdf:Statement ;
up:attribution _:397631 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:397654 a rdf:Statement ;
up:attribution _:397632 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016151 .
_:397655 a rdf:Statement ;
up:attribution _:397633 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:484 .
_:397656 a rdf:Statement ;
up:attribution _:397634 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019385 .
_:397657 a rdf:Statement ;
up:source unirule:MF_01138 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:397658 a rdf:Statement ;
up:attribution _:397635 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:397659 a rdf:Statement ;
up:source unirule:MF_01138 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:397660 a rdf:Statement ;
up:attribution _:397636 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:397661 a rdf:Statement ;
up:source unirule:MF_01138 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:397662 a rdf:Statement ;
up:attribution _:397637 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:397663 a rdf:Statement ;
up:source unirule:MF_01138 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:397664 a rdf:Statement ;
up:attribution _:397638 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01138
#Rule MF_01138 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01138 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01138a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01138a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01138a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01138a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01138a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01138a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z441 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z443 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z4MF_0113836 .
?templateMotifSequenceMatchRegionQ9V2Z441 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z442 .
?templateMotifSequenceMatchBeginQ9V2Z442 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z437 ;
faldo:reference isoform:Q9V2Z4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z443 edam:has_input signature:MF_01138 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0113847 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z4MF_0113838 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0113846 .
?targetMotifMatchRegionMatchBeginMF_0113846 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0113839 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0113847 edam:has_input signature:MF_01138 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z4MF_0113836, 1, (STRLEN(?templateMotifCigarQ9V2Z4MF_0113836) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z4MF_0113836, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionQ9V2Z437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0113839) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z4MF_0113836, 1, (STRLEN(?templateMotifCigarQ9V2Z4MF_0113836) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z4MF_0113836, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ9V2Z437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0113839) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z4MF_0113836, 1, (STRLEN(?templateMotifCigarQ9V2Z4MF_0113836) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z4MF_0113836, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionQ9V2Z437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0113839) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z4MF_0113836, 1, (STRLEN(?templateMotifCigarQ9V2Z4MF_0113836) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z4MF_0113836, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionQ9V2Z437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z4MF_0113838, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z4MF_0113838) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z4MF_0113838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0113839) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag60) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag60, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2206 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2206 .
})) .
BIND(?this AS ?case10) .
}
}
"xsd:string |
