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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-135 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-136 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-132 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-125 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-130 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-140 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-141 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-126 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-128 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-143 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-4 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-121 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-100 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-122 |
| http://purl.uniprot.org/unirules/MF_01277#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01277#construct-template-124 |
| http://purl.uniprot.org/unirules/MF_01277#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01277#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01277#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01277#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01277#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01277#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:454899 up:source unirule:MF_01277 . _:454900 up:source unirule:MF_01277 . _:454901 up:source unirule:MF_01277 . _:454902 up:source unirule:MF_01277 . _:454903 up:source unirule:MF_01277 . _:454904 up:source unirule:MF_01277 . _:454905 up:source unirule:MF_01277 . _:454906 up:source unirule:MF_01277 . _:454907 up:source unirule:MF_01277 . _:454908 up:source unirule:MF_01277 . _:454909 up:source unirule:MF_01277 . _:454910 up:source unirule:MF_01277 . _:454911 up:source unirule:MF_01277 . _:454912 up:source unirule:MF_01277 . _:454913 up:source unirule:MF_01277 . _:454914 up:source unirule:MF_01277 . _:454915 up:source unirule:MF_01277 . _:454916 up:source unirule:MF_01277 . _:454917 up:source unirule:MF_01277 . _:454918 up:source unirule:MF_01277 . _:454919 up:source unirule:MF_01277 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0045892 , keyword:238 , keyword:658 , keyword:678 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:fullName 'HTH-type transcriptional repressor PurR' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Pur regulon repressor' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Purine nucleotide synthesis repressor' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'purR' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression.' . ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Purine metabolism; purine nucleotide biosynthesis [regulation].' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Domain_Annotation ; rdfs:comment 'Consists of two structural and functional domains: an N-terminal DNA-binding domain, approximately the first 60 residues, and a larger C-terminal domain, approximately 280 residues, which imparts the function of corepressor binding and oligomerization.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Nucleotide_Binding_Annotation ; rdfs:comment 'H-T-H motif' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Nucleotide_Binding_Annotation . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:17368 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:17368 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:17368 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:17368 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:17368 . _:454920 a rdf:Statement ; up:attribution _:454899 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:454921 a rdf:Statement ; up:attribution _:454900 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:454922 a rdf:Statement ; up:attribution _:454901 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:454923 a rdf:Statement ; up:attribution _:454902 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:454924 a rdf:Statement ; up:attribution _:454903 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:454925 a rdf:Statement ; up:attribution _:454904 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:454926 a rdf:Statement ; up:attribution _:454905 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:454927 a rdf:Statement ; up:attribution _:454906 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:454928 a rdf:Statement ; up:attribution _:454907 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:454929 a rdf:Statement ; up:attribution _:454908 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:658 . _:454930 a rdf:Statement ; up:attribution _:454909 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:678 . _:454931 a rdf:Statement ; up:attribution _:454910 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:454932 a rdf:Statement ; up:attribution _:454911 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:454933 a rdf:Statement ; up:attribution _:454912 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045892 . _:454934 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:454935 a rdf:Statement ; up:attribution _:454913 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:454936 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:454937 a rdf:Statement ; up:attribution _:454914 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:454938 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:454939 a rdf:Statement ; up:attribution _:454915 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:454940 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:454941 a rdf:Statement ; up:attribution _:454916 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:454942 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:454943 a rdf:Statement ; up:attribution _:454917 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:454944 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:454945 a rdf:Statement ; up:attribution _:454918 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:454946 a rdf:Statement ; up:source unirule:MF_01277 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:454947 a rdf:Statement ; up:attribution _:454919 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01277 #Rule MF_01277 Created by:? on:2007-02-09 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01277 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_01277a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01277a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01277a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01277a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01277a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01277a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01277a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP0ACP760 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP762 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_0127755 . ?templateMotifSequenceMatchRegionP0ACP760 faldo:begin ?templateMotifSequenceMatchBeginP0ACP761 . ?templateMotifSequenceMatchBeginP0ACP761 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP756 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP762 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127766 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_0127757 . ?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127765 . ?targetMotifMatchRegionMatchBeginMF_0127765 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127758 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0127766 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_0127755, 1, (STRLEN(?templateMotifCigarP0ACP7MF_0127755) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_0127755, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP0ACP756) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127757, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127757) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127757, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127757, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127757) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127757, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0127758) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_0127755, 1, (STRLEN(?templateMotifCigarP0ACP7MF_0127755) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_0127755, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0ACP756) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127757, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127757) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127757, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127757, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127757) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127757, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0127758) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) . BIND(URI(CONCAT(STR(?this), '#MF_01277a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP0ACP777 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP779 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_0127772 . ?templateMotifSequenceMatchRegionP0ACP777 faldo:begin ?templateMotifSequenceMatchBeginP0ACP778 . ?templateMotifSequenceMatchBeginP0ACP778 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP773 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP779 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127783 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_0127774 . ?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127782 . ?targetMotifMatchRegionMatchBeginMF_0127782 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127775 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0127783 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_0127772, 1, (STRLEN(?templateMotifCigarP0ACP7MF_0127772) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_0127772, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP0ACP773) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127774, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127774) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127774, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127774) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0127775) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_0127772, 1, (STRLEN(?templateMotifCigarP0ACP7MF_0127772) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_0127772, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP0ACP773) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127774, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127774) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127774, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127774) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0127775) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) . BIND(URI(CONCAT(STR(?this), '#MF_01277a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP0ACP794 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP796 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_0127789 . ?templateMotifSequenceMatchRegionP0ACP794 faldo:begin ?templateMotifSequenceMatchBeginP0ACP795 . ?templateMotifSequenceMatchBeginP0ACP795 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP790 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP796 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01277100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_0127791 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127799 . ?targetMotifMatchRegionMatchBeginMF_0127799 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127792 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01277100 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_0127789, 1, (STRLEN(?templateMotifCigarP0ACP7MF_0127789) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_0127789, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0ACP790) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127791, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127791) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127791, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_0127791, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_0127791) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_0127791, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0127792) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01277a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP0ACP7109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP7111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_01277104 . ?templateMotifSequenceMatchRegionP0ACP7109 faldo:begin ?templateMotifSequenceMatchBeginP0ACP7110 . ?templateMotifSequenceMatchBeginP0ACP7110 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP7105 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP7111 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01277115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_01277106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01277114 . ?targetMotifMatchRegionMatchBeginMF_01277114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01277107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01277115 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_01277104, 1, (STRLEN(?templateMotifCigarP0ACP7MF_01277104) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_01277104, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP0ACP7105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277106, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277106) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277106, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277106) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01277107) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01277a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP0ACP7124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP7126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_01277119 . ?templateMotifSequenceMatchRegionP0ACP7124 faldo:begin ?templateMotifSequenceMatchBeginP0ACP7125 . ?templateMotifSequenceMatchBeginP0ACP7125 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP7120 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP7126 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01277130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_01277121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01277129 . ?targetMotifMatchRegionMatchBeginMF_01277129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01277122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01277130 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_01277119, 1, (STRLEN(?templateMotifCigarP0ACP7MF_01277119) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_01277119, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP0ACP7120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277121, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277121) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277121, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277121) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01277122) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01277a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP0ACP7139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP7141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_01277134 . ?templateMotifSequenceMatchRegionP0ACP7139 faldo:begin ?templateMotifSequenceMatchBeginP0ACP7140 . ?templateMotifSequenceMatchBeginP0ACP7140 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP7135 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP7141 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01277145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_01277136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01277144 . ?targetMotifMatchRegionMatchBeginMF_01277144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01277137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01277145 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_01277134, 1, (STRLEN(?templateMotifCigarP0ACP7MF_01277134) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_01277134, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP0ACP7135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277136, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277136) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277136, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277136) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01277137) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_01277a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0ACP7154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACP7156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ACP7MF_01277149 . ?templateMotifSequenceMatchRegionP0ACP7154 faldo:begin ?templateMotifSequenceMatchBeginP0ACP7155 . ?templateMotifSequenceMatchBeginP0ACP7155 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACP7150 ; faldo:reference isoform:P0ACP7-1 . ?templateMotifSequenceProfileAlignmentOperationP0ACP7156 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01277160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ACP7MF_01277151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01277159 . ?targetMotifMatchRegionMatchBeginMF_01277159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01277152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01277160 edam:has_input signature:MF_01277 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACP7MF_01277149, 1, (STRLEN(?templateMotifCigarP0ACP7MF_01277149) - STRLEN(REPLACE(?templateMotifCigarP0ACP7MF_01277149, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP0ACP7150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277151, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACP7MF_01277151, 1, (STRLEN(?targetMotifMatchCigarP0ACP7MF_01277151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACP7MF_01277151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01277152) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01277a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } } "xsd:string |