| http://purl.uniprot.org/unirules/MF_01289#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:461792 up:source unirule:MF_01289 .
_:461793 up:source unirule:MF_01289 .
_:461794 up:source unirule:MF_01289 .
_:461795 up:source unirule:MF_01289 .
_:461796 up:source unirule:MF_01289 .
_:461797 up:source unirule:MF_01289 .
_:461798 up:source unirule:MF_01289 .
_:461799 up:source unirule:MF_01289 .
_:461800 up:source unirule:MF_01289 .
_:461801 up:source unirule:MF_01289 .
_:461802 up:source unirule:MF_01289 .
_:461803 up:source unirule:MF_01289 .
_:461804 up:source unirule:MF_01289 .
_:461805 up:source unirule:MF_01289 .
_:461806 up:source unirule:MF_01289 .
_:461807 up:source unirule:MF_01289 .
_:461808 up:source unirule:MF_01289 .
_:461809 up:source unirule:MF_01289 .
_:461810 up:source unirule:MF_01289 .
_:461811 up:source unirule:MF_01289 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008869 ,
GO:0034194 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.6' ;
up:fullName 'D-galactonate dehydratase' ;
up:shortName 'GalD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dgoD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy-D-galactonate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate acid metabolism; D-galactonate degradation; D-glyceraldehyde 3-phosphate and pyruvate from D-galactonate: step 1/3.' .
?annotation6 a up:Annotation ;
rdfs:comment 'Reaction proceeds via an anti dehydration.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.' .
?case8 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:18420 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:18420 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:18420 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Increases basicity of active site His' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
_:461812 a rdf:Statement ;
up:attribution _:461792 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:461813 a rdf:Statement ;
up:attribution _:461793 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:461814 a rdf:Statement ;
up:attribution _:461794 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:461815 a rdf:Statement ;
up:attribution _:461795 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:461816 a rdf:Statement ;
up:attribution _:461796 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:461817 a rdf:Statement ;
up:attribution _:461797 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:461818 a rdf:Statement ;
up:attribution _:461798 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:461819 a rdf:Statement ;
up:attribution _:461799 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:461820 a rdf:Statement ;
up:attribution _:461800 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008869 .
_:461821 a rdf:Statement ;
up:attribution _:461801 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034194 .
_:461822 a rdf:Statement ;
up:attribution _:461802 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:461823 a rdf:Statement ;
up:attribution _:461803 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:461824 a rdf:Statement ;
up:attribution _:461804 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:461825 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:461826 a rdf:Statement ;
up:attribution _:461805 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:461827 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:461828 a rdf:Statement ;
up:attribution _:461806 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:461829 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:461830 a rdf:Statement ;
up:attribution _:461807 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:461831 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:461832 a rdf:Statement ;
up:attribution _:461808 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:461833 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:461834 a rdf:Statement ;
up:attribution _:461809 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:461835 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:461836 a rdf:Statement ;
up:attribution _:461810 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:461837 a rdf:Statement ;
up:source unirule:MF_01289 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:461838 a rdf:Statement ;
up:attribution _:461811 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01289
#Rule MF_01289 Created by:? on:2008-09-19 Modified by:Edouard de Castro on:2023-01-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01289 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01289a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionQ6BF1757 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1759 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6BF17MF_0128952 .
?templateMotifSequenceMatchRegionQ6BF1757 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1758 .
?templateMotifSequenceMatchBeginQ6BF1758 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1753 ;
faldo:reference isoform:Q6BF17-1 .
?templateMotifSequenceProfileAlignmentOperationQ6BF1759 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128963 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6BF17MF_0128954 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128962 .
?targetMotifMatchRegionMatchBeginMF_0128962 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128955 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128963 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128952, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128952) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128952, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionQ6BF1753) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128954, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128954) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128954, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0128955) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ6BF1778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6BF17MF_0128973 .
?templateMotifSequenceMatchRegionQ6BF1778 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1779 .
?templateMotifSequenceMatchBeginQ6BF1779 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1774 ;
faldo:reference isoform:Q6BF17-1 .
?templateMotifSequenceProfileAlignmentOperationQ6BF1780 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128984 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6BF17MF_0128975 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128983 .
?targetMotifMatchRegionMatchBeginMF_0128983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128976 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128984 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128973, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128973) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128973, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ6BF1774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128975, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128975) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128975, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128975) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0128976) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs2t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ6BF1793 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF1795 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6BF17MF_0128988 .
?templateMotifSequenceMatchRegionQ6BF1793 faldo:begin ?templateMotifSequenceMatchBeginQ6BF1794 .
?templateMotifSequenceMatchBeginQ6BF1794 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF1789 ;
faldo:reference isoform:Q6BF17-1 .
?templateMotifSequenceProfileAlignmentOperationQ6BF1795 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128999 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6BF17MF_0128990 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128998 .
?targetMotifMatchRegionMatchBeginMF_0128998 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128991 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128999 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_0128988, 1, (STRLEN(?templateMotifCigarQ6BF17MF_0128988) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_0128988, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionQ6BF1789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128990, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128990) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_0128990, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_0128990) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_0128990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0128991) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ6BF17108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF17110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6BF17MF_01289103 .
?templateMotifSequenceMatchRegionQ6BF17108 faldo:begin ?templateMotifSequenceMatchBeginQ6BF17109 .
?templateMotifSequenceMatchBeginQ6BF17109 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF17104 ;
faldo:reference isoform:Q6BF17-1 .
?templateMotifSequenceProfileAlignmentOperationQ6BF17110 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01289114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6BF17MF_01289105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01289113 .
?targetMotifMatchRegionMatchBeginMF_01289113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01289106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01289114 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_01289103, 1, (STRLEN(?templateMotifCigarQ6BF17MF_01289103) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_01289103, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionQ6BF17104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289105, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289105) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289105, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289105) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01289106) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ6BF17123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6BF17125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6BF17MF_01289118 .
?templateMotifSequenceMatchRegionQ6BF17123 faldo:begin ?templateMotifSequenceMatchBeginQ6BF17124 .
?templateMotifSequenceMatchBeginQ6BF17124 faldo:position ?templateMotifSequenceMatchBeginPositionQ6BF17119 ;
faldo:reference isoform:Q6BF17-1 .
?templateMotifSequenceProfileAlignmentOperationQ6BF17125 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01289129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6BF17MF_01289120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01289128 .
?targetMotifMatchRegionMatchBeginMF_01289128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01289121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01289129 edam:has_input signature:MF_01289 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6BF17MF_01289118, 1, (STRLEN(?templateMotifCigarQ6BF17MF_01289118) - STRLEN(REPLACE(?templateMotifCigarQ6BF17MF_01289118, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionQ6BF17119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289120, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289120) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6BF17MF_01289120, 1, (STRLEN(?targetMotifMatchCigarQ6BF17MF_01289120) - STRLEN(REPLACE(?targetMotifMatchCigarQ6BF17MF_01289120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01289121) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01289a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag133) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag133, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
