| http://purl.uniprot.org/unirules/MF_01414#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:512066 up:source unirule:MF_01414 .
_:512067 up:source unirule:MF_01414 .
_:512068 up:source unirule:MF_01414 .
_:512069 up:source unirule:MF_01414 .
_:512070 up:source unirule:MF_01414 .
_:512071 up:source unirule:MF_01414 .
_:512072 up:source unirule:MF_01414 .
_:512073 up:source unirule:MF_01414 .
_:512074 up:source unirule:MF_01414 .
_:512075 up:source unirule:MF_01414 .
_:512076 up:source unirule:MF_01414 .
_:512077 up:source unirule:MF_01414 .
_:512078 up:source unirule:MF_01414 .
_:512079 up:source unirule:MF_01414 .
_:512080 up:source unirule:MF_01414 .
_:512081 up:source unirule:MF_01414 .
_:512082 up:source unirule:MF_01414 .
_:512083 up:source unirule:MF_01414 .
_:512084 up:source unirule:MF_01414 .
_:512085 up:source unirule:MF_01414 .
_:512086 up:source unirule:MF_01414 .
_:512087 up:source unirule:MF_01414 .
_:512088 up:source unirule:MF_01414 .
_:512089 up:source unirule:MF_01414 .
_:512090 up:source unirule:MF_01414 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0003955 ,
GO:0010181 ,
GO:0032414 ,
GO:1901381 ,
keyword:1003 ,
keyword:285 ,
keyword:288 ,
keyword:472 ,
keyword:520 ,
keyword:560 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Glutathione-regulated potassium-efflux system ancillary protein KefF' ;
rdf:type up:Structured_Name .
?name1 up:ecName '1.6.5.2' ;
up:fullName 'Quinone oxidoreductase KefF' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'kefF' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefC. Shows redox enzymatic activity, but this enzymatic activity is not required for activation of KefC.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Interacts with KefC.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD(P)H dehydrogenase (quinone) family. KefF subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:58210 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:58210 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:58210 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:58210 .
_:512091 a rdf:Statement ;
up:attribution _:512066 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:512092 a rdf:Statement ;
up:attribution _:512067 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:512093 a rdf:Statement ;
up:attribution _:512068 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:512094 a rdf:Statement ;
up:attribution _:512069 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:512095 a rdf:Statement ;
up:attribution _:512070 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:512096 a rdf:Statement ;
up:attribution _:512071 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:512097 a rdf:Statement ;
up:attribution _:512072 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:512098 a rdf:Statement ;
up:attribution _:512073 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:512099 a rdf:Statement ;
up:attribution _:512074 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:512100 a rdf:Statement ;
up:attribution _:512075 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:512101 a rdf:Statement ;
up:attribution _:512076 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:512102 a rdf:Statement ;
up:attribution _:512077 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:512103 a rdf:Statement ;
up:attribution _:512078 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:512104 a rdf:Statement ;
up:attribution _:512079 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:512105 a rdf:Statement ;
up:attribution _:512080 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:512106 a rdf:Statement ;
up:attribution _:512081 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:512107 a rdf:Statement ;
up:attribution _:512082 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:512108 a rdf:Statement ;
up:attribution _:512083 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003955 .
_:512109 a rdf:Statement ;
up:attribution _:512084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:512110 a rdf:Statement ;
up:attribution _:512085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032414 .
_:512111 a rdf:Statement ;
up:attribution _:512086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1901381 .
_:512112 a rdf:Statement ;
up:source unirule:MF_01414 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:512113 a rdf:Statement ;
up:attribution _:512087 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:512114 a rdf:Statement ;
up:source unirule:MF_01414 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:512115 a rdf:Statement ;
up:attribution _:512088 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:512116 a rdf:Statement ;
up:source unirule:MF_01414 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:512117 a rdf:Statement ;
up:attribution _:512089 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:512118 a rdf:Statement ;
up:source unirule:MF_01414 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:512119 a rdf:Statement ;
up:attribution _:512090 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01414
#Rule MF_01414 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01414 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01414a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP0A75446 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A75448 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A754MF_0141441 .
?templateMotifSequenceMatchRegionP0A75446 faldo:begin ?templateMotifSequenceMatchBeginP0A75447 .
?templateMotifSequenceMatchBeginP0A75447 faldo:position ?templateMotifSequenceMatchBeginPositionP0A75442 ;
faldo:reference isoform:P0A754-1 .
?templateMotifSequenceProfileAlignmentOperationP0A75448 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141452 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A754MF_0141443 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141451 .
?targetMotifMatchRegionMatchBeginMF_0141451 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141444 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141452 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141441, 1, (STRLEN(?templateMotifCigarP0A754MF_0141441) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141441, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A75442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141443, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141443, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0141444) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141441, 1, (STRLEN(?templateMotifCigarP0A754MF_0141441) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141441, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A75442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141443, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141443, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0141444) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP0A75463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A75465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A754MF_0141458 .
?templateMotifSequenceMatchRegionP0A75463 faldo:begin ?templateMotifSequenceMatchBeginP0A75464 .
?templateMotifSequenceMatchBeginP0A75464 faldo:position ?templateMotifSequenceMatchBeginPositionP0A75459 ;
faldo:reference isoform:P0A754-1 .
?templateMotifSequenceProfileAlignmentOperationP0A75465 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A754MF_0141460 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141468 .
?targetMotifMatchRegionMatchBeginMF_0141468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141469 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141458, 1, (STRLEN(?templateMotifCigarP0A754MF_0141458) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141458, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A75459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141460, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141460) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141460, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141460) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0141461) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141458, 1, (STRLEN(?templateMotifCigarP0A754MF_0141458) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141458, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP0A75459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141460, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141460) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141460, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141460) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0141461) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('[ML][ARNDCQEGHILKMFPSTWYVBZJUOX]WY', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP0A75480 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A75482 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A754MF_0141475 .
?templateMotifSequenceMatchRegionP0A75480 faldo:begin ?templateMotifSequenceMatchBeginP0A75481 .
?templateMotifSequenceMatchBeginP0A75481 faldo:position ?templateMotifSequenceMatchBeginPositionP0A75476 ;
faldo:reference isoform:P0A754-1 .
?templateMotifSequenceProfileAlignmentOperationP0A75482 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0141486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A754MF_0141477 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0141485 .
?targetMotifMatchRegionMatchBeginMF_0141485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0141486 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141475, 1, (STRLEN(?templateMotifCigarP0A754MF_0141475) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141475, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP0A75476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141477, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141477) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141477, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141477) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0141478) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141475, 1, (STRLEN(?templateMotifCigarP0A754MF_0141475) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141475, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP0A75476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141477, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141477) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141477, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141477) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0141478) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP0A75497 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A75499 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A754MF_0141492 .
?templateMotifSequenceMatchRegionP0A75497 faldo:begin ?templateMotifSequenceMatchBeginP0A75498 .
?templateMotifSequenceMatchBeginP0A75498 faldo:position ?templateMotifSequenceMatchBeginPositionP0A75493 ;
faldo:reference isoform:P0A754-1 .
?templateMotifSequenceProfileAlignmentOperationP0A75499 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01414103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A754MF_0141494 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01414102 .
?targetMotifMatchRegionMatchBeginMF_01414102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0141495 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01414103 edam:has_input signature:MF_01414 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A754MF_0141492, 1, (STRLEN(?templateMotifCigarP0A754MF_0141492) - STRLEN(REPLACE(?templateMotifCigarP0A754MF_0141492, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP0A75493) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A754MF_0141494, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141494) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A754MF_0141494, 1, (STRLEN(?targetMotifMatchCigarP0A754MF_0141494) - STRLEN(REPLACE(?targetMotifMatchCigarP0A754MF_0141494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0141495) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01414a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
