| http://purl.uniprot.org/unirules/MF_01472#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:533831 up:source unirule:MF_01472 .
_:533832 up:source unirule:MF_01472 .
_:533833 up:source unirule:MF_01472 .
_:533834 up:source unirule:MF_01472 .
_:533835 up:source unirule:MF_01472 .
_:533836 up:source unirule:MF_01472 .
_:533837 up:source unirule:MF_01472 .
_:533838 up:source unirule:MF_01472 .
_:533839 up:source unirule:MF_01472 .
_:533840 up:source unirule:MF_01472 .
_:533841 up:source unirule:MF_01472 .
_:533842 up:source unirule:MF_01472 .
_:533843 up:source unirule:MF_01472 .
_:533844 up:source unirule:MF_01472 .
_:533845 up:source unirule:MF_01472 .
_:533846 up:source unirule:MF_01472 .
_:533847 up:source unirule:MF_01472 .
_:533848 up:source unirule:MF_01472 .
_:533849 up:source unirule:MF_01472 .
_:533850 up:source unirule:MF_01472 .
_:533851 up:source unirule:MF_01472 .
_:533852 up:source unirule:MF_01472 .
_:533853 up:source unirule:MF_01472 .
_:533854 up:source unirule:MF_01472 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0005886 ,
GO:0006493 ,
GO:0016757 ,
GO:0017122 ,
keyword:1003 ,
keyword:328 ,
keyword:472 ,
keyword:547 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.1.-' ;
up:fullName 'UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase GtfA subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glycosyltransferase GtfA' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'gtfA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Required for polymorphic O-glycosylation of the serine-rich repeat protein in this bacteria. Catalyzes the first step in glycosylation by transferring N-acetylglucosamine from UDP-GlcNAc to serine residues in the substrate protein. Part of the accessory SecA2/SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; protein glycosylation.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Forms a heterotetramer with 2 subunits each of GtfA and GtfB. Part of the accessory SecA2/SecY2 protein translocation apparatus.' .
?annotation8 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Cell membrane association requires GtfB' .
?annotation8li9 up:cellularComponent .
?annotation8li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyltransferase group 1 family. Glycosyltransferase 4 subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58223 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:58223 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:506227 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:506227 .
_:533855 a rdf:Statement ;
up:attribution _:533831 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:533856 a rdf:Statement ;
up:attribution _:533832 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:533857 a rdf:Statement ;
up:attribution _:533833 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:533858 a rdf:Statement ;
up:attribution _:533834 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:533859 a rdf:Statement ;
up:attribution _:533835 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:533860 a rdf:Statement ;
up:attribution _:533836 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:533861 a rdf:Statement ;
up:attribution _:533837 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:533862 a rdf:Statement ;
up:attribution _:533838 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:533863 a rdf:Statement ;
up:attribution _:533839 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:533864 a rdf:Statement ;
up:attribution _:533840 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:533865 a rdf:Statement ;
up:attribution _:533841 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:533866 a rdf:Statement ;
up:attribution _:533842 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:533867 a rdf:Statement ;
up:attribution _:533843 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:533868 a rdf:Statement ;
up:attribution _:533844 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:533869 a rdf:Statement ;
up:attribution _:533845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:533870 a rdf:Statement ;
up:attribution _:533846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006493 .
_:533871 a rdf:Statement ;
up:attribution _:533847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016757 .
_:533872 a rdf:Statement ;
up:attribution _:533848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017122 .
_:533873 a rdf:Statement ;
up:attribution _:533849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:533874 a rdf:Statement ;
up:attribution _:533850 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:533875 a rdf:Statement ;
up:source unirule:MF_01472 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:533876 a rdf:Statement ;
up:attribution _:533851 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:533877 a rdf:Statement ;
up:source unirule:MF_01472 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:533878 a rdf:Statement ;
up:attribution _:533852 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:533879 a rdf:Statement ;
up:source unirule:MF_01472 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:533880 a rdf:Statement ;
up:attribution _:533853 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:533881 a rdf:Statement ;
up:source unirule:MF_01472 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:533882 a rdf:Statement ;
up:attribution _:533854 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01472
#Rule MF_01472 Created by:? on:2012-06-14 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01472 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01472a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionA0A0H2URG745 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H2URG747 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H2URG7MF_0147240 .
?templateMotifSequenceMatchRegionA0A0H2URG745 faldo:begin ?templateMotifSequenceMatchBeginA0A0H2URG746 .
?templateMotifSequenceMatchBeginA0A0H2URG746 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H2URG741 ;
faldo:reference isoform:A0A0H2URG7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H2URG747 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0147251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H2URG7MF_0147242 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0147250 .
?targetMotifMatchRegionMatchBeginMF_0147250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0147243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0147251 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147240, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147240) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147240, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG741) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147242, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147242) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147242, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147242) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0147243) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147240, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147240) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147240, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG741) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147242, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147242) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147242, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147242) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0147243) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'GVEY')) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionA0A0H2URG762 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H2URG764 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H2URG7MF_0147257 .
?templateMotifSequenceMatchRegionA0A0H2URG762 faldo:begin ?templateMotifSequenceMatchBeginA0A0H2URG763 .
?templateMotifSequenceMatchBeginA0A0H2URG763 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H2URG758 ;
faldo:reference isoform:A0A0H2URG7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H2URG764 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0147268 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H2URG7MF_0147259 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0147267 .
?targetMotifMatchRegionMatchBeginMF_0147267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0147260 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0147268 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147257, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147257) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147257, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG758) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147259, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147259) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147259, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147259) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0147260) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147257, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147257) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147257, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG758) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147259, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147259) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147259, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147259) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0147260) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('[HQ][AHKQRVY]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionA0A0H2URG779 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H2URG781 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H2URG7MF_0147274 .
?templateMotifSequenceMatchRegionA0A0H2URG779 faldo:begin ?templateMotifSequenceMatchBeginA0A0H2URG780 .
?templateMotifSequenceMatchBeginA0A0H2URG780 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H2URG775 ;
faldo:reference isoform:A0A0H2URG7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H2URG781 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0147285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H2URG7MF_0147276 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0147284 .
?targetMotifMatchRegionMatchBeginMF_0147284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0147277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0147285 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147274, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147274) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147274, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG775) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147276, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147276) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147276, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147276) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0147277) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147274, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147274) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147274, CONCAT('^(?:-*[^-]){', STR(((407 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG775) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147276, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147276) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147276, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147276) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0147277) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)) = 'EGFG')) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionA0A0H2URG796 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H2URG798 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H2URG7MF_0147291 .
?templateMotifSequenceMatchRegionA0A0H2URG796 faldo:begin ?templateMotifSequenceMatchBeginA0A0H2URG797 .
?templateMotifSequenceMatchBeginA0A0H2URG797 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H2URG792 ;
faldo:reference isoform:A0A0H2URG7-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H2URG798 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01472102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H2URG7MF_0147293 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01472101 .
?targetMotifMatchRegionMatchBeginMF_01472101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0147294 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01472102 edam:has_input signature:MF_01472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H2URG7MF_0147291, 1, (STRLEN(?templateMotifCigarA0A0H2URG7MF_0147291) - STRLEN(REPLACE(?templateMotifCigarA0A0H2URG7MF_0147291, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionA0A0H2URG792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147293, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147293) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H2URG7MF_0147293, 1, (STRLEN(?targetMotifMatchCigarA0A0H2URG7MF_0147293) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H2URG7MF_0147293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0147294) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01472a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
}
"xsd:string |
