| http://purl.uniprot.org/unirules/MF_01547#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:560908 up:source unirule:MF_01547 .
_:560909 up:source unirule:MF_01547 .
_:560910 up:source unirule:MF_01547 .
_:560911 up:source unirule:MF_01547 .
_:560912 up:source unirule:MF_01547 .
_:560913 up:source unirule:MF_01547 .
_:560914 up:source unirule:MF_01547 .
_:560915 up:source unirule:MF_01547 .
_:560916 up:source unirule:MF_01547 .
_:560917 up:source unirule:MF_01547 .
_:560918 up:source unirule:MF_01547 .
_:560919 up:source unirule:MF_01547 .
_:560920 up:source unirule:MF_01547 .
_:560921 up:source unirule:MF_01547 .
_:560922 up:source unirule:MF_01547 .
_:560923 up:source unirule:MF_01547 .
_:560924 up:source unirule:MF_01547 .
_:560925 up:source unirule:MF_01547 .
_:560926 up:source unirule:MF_01547 .
_:560927 up:source unirule:MF_01547 .
_:560928 up:source unirule:MF_01547 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0006364 ,
GO:0008650 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.166' ;
up:fullName 'Ribosomal RNA large subunit methyltransferase E' ;
rdf:type up:Structured_Name .
?name1 up:fullName '23S rRNA Um2552 methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName "rRNA (uridine-2'-O-)-methyltransferase" ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 ,
?annotation24 ,
?annotation30 ,
?annotation36 ,
?annotation42 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:59789 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:59789 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:59789 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:59789 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:59789 .
_:560929 a rdf:Statement ;
up:attribution _:560908 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:560930 a rdf:Statement ;
up:attribution _:560909 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:560931 a rdf:Statement ;
up:attribution _:560910 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:560932 a rdf:Statement ;
up:attribution _:560911 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:560933 a rdf:Statement ;
up:attribution _:560912 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:560934 a rdf:Statement ;
up:attribution _:560913 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:560935 a rdf:Statement ;
up:attribution _:560914 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:560936 a rdf:Statement ;
up:attribution _:560915 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:560937 a rdf:Statement ;
up:attribution _:560916 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:560938 a rdf:Statement ;
up:attribution _:560917 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:560939 a rdf:Statement ;
up:attribution _:560918 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:560940 a rdf:Statement ;
up:attribution _:560919 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:560941 a rdf:Statement ;
up:attribution _:560920 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008650 .
_:560942 a rdf:Statement ;
up:attribution _:560921 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006364 .
_:560943 a rdf:Statement ;
up:attribution _:560922 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:560944 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:560945 a rdf:Statement ;
up:attribution _:560923 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:560946 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:560947 a rdf:Statement ;
up:attribution _:560924 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:560948 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:560949 a rdf:Statement ;
up:attribution _:560925 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:560950 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:560951 a rdf:Statement ;
up:attribution _:560926 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:560952 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:560953 a rdf:Statement ;
up:attribution _:560927 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:560954 a rdf:Statement ;
up:source unirule:MF_01547 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:560955 a rdf:Statement ;
up:attribution _:560928 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01547
#Rule MF_01547 Created by:? on:2005-11-22 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03163 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03163 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03162 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03163 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03163 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03162 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01547 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01547a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP0C0R753 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0R755 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0R7MF_0154748 .
?templateMotifSequenceMatchRegionP0C0R753 faldo:begin ?templateMotifSequenceMatchBeginP0C0R754 .
?templateMotifSequenceMatchBeginP0C0R754 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0R749 ;
faldo:reference isoform:P0C0R7-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0R755 edam:has_input signature:MF_01547 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154759 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0R7MF_0154750 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154758 .
?targetMotifMatchRegionMatchBeginMF_0154758 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154751 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154759 edam:has_input signature:MF_01547 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154748, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154748) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154748, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0C0R749) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154750, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154750) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154750, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154750) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0154751) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01547a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0C0R768 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0R770 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0C0R7MF_0154763 .
?templateMotifSequenceMatchRegionP0C0R768 faldo:begin ?templateMotifSequenceMatchBeginP0C0R769 .
?templateMotifSequenceMatchBeginP0C0R769 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0R764 ;
faldo:reference isoform:P0C0R7-1 .
?templateMotifSequenceProfileAlignmentOperationP0C0R770 edam:has_input signature:MF_01547 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0154774 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0C0R7MF_0154765 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0154773 .
?targetMotifMatchRegionMatchBeginMF_0154773 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0154766 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0154774 edam:has_input signature:MF_01547 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154763, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154763) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154763, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP0C0R764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0154766) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154763, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154763) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154763, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0C0R764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0154766) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs2t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154763, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154763) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154763, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP0C0R764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0154766) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154763, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154763) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154763, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP0C0R764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0154766) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0R7MF_0154763, 1, (STRLEN(?templateMotifCigarP0C0R7MF_0154763) - STRLEN(REPLACE(?templateMotifCigarP0C0R7MF_0154763, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP0C0R764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0R7MF_0154765, 1, (STRLEN(?targetMotifMatchCigarP0C0R7MF_0154765) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0R7MF_0154765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0154766) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'D')) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
