| http://purl.uniprot.org/unirules/MF_01558#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:564084 up:source unirule:MF_01558 .
_:564085 up:source unirule:MF_01558 .
_:564086 up:source unirule:MF_01558 .
_:564087 up:source unirule:MF_01558 .
_:564088 up:source unirule:MF_01558 .
_:564089 up:source unirule:MF_01558 .
_:564090 up:source unirule:MF_01558 .
_:564091 up:source unirule:MF_01558 .
_:564092 up:source unirule:MF_01558 .
_:564093 up:source unirule:MF_01558 .
_:564094 up:source unirule:MF_01558 .
_:564095 up:source unirule:MF_01558 .
_:564096 up:source unirule:MF_01558 .
_:564097 up:source unirule:MF_01558 .
_:564098 up:source unirule:MF_01558 .
_:564099 up:source unirule:MF_01558 .
_:564100 up:source unirule:MF_01558 .
_:564101 up:source unirule:MF_01558 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0004126 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.4.5' ;
up:fullName 'Cytidine deaminase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cytidine aminohydrolase' ;
up:shortName 'CDA' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cdd' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cytidine and deoxycytidylate deaminase family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf ?molecule35 .
?molecule35 rdfs:label 'substrate' .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:564102 a rdf:Statement ;
up:attribution _:564084 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:564103 a rdf:Statement ;
up:attribution _:564085 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:564104 a rdf:Statement ;
up:attribution _:564086 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:564105 a rdf:Statement ;
up:attribution _:564087 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:564106 a rdf:Statement ;
up:attribution _:564088 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:564107 a rdf:Statement ;
up:attribution _:564089 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:564108 a rdf:Statement ;
up:attribution _:564090 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:564109 a rdf:Statement ;
up:attribution _:564091 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:564110 a rdf:Statement ;
up:attribution _:564092 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:564111 a rdf:Statement ;
up:attribution _:564093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004126 .
_:564112 a rdf:Statement ;
up:attribution _:564094 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:564113 a rdf:Statement ;
up:attribution _:564095 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:564114 a rdf:Statement ;
up:attribution _:564096 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:564115 a rdf:Statement ;
up:source unirule:MF_01558 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:564116 a rdf:Statement ;
up:attribution _:564097 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:564117 a rdf:Statement ;
up:source unirule:MF_01558 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:564118 a rdf:Statement ;
up:attribution _:564098 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:564119 a rdf:Statement ;
up:source unirule:MF_01558 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:564120 a rdf:Statement ;
up:attribution _:564099 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:564121 a rdf:Statement ;
up:source unirule:MF_01558 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:564122 a rdf:Statement ;
up:attribution _:564100 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:564123 a rdf:Statement ;
up:source unirule:MF_01558 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:564124 a rdf:Statement ;
up:attribution _:564101 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01558
#Rule MF_01558 Created by:? on:2005-12-12 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01558 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01558a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP0ABF649 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABF651 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABF6MF_0155844 .
?templateMotifSequenceMatchRegionP0ABF649 faldo:begin ?templateMotifSequenceMatchBeginP0ABF650 .
?templateMotifSequenceMatchBeginP0ABF650 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABF645 ;
faldo:reference isoform:P0ABF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABF651 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0155855 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABF6MF_0155846 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0155854 .
?targetMotifMatchRegionMatchBeginMF_0155854 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0155847 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0155855 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155844, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155844) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155844, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP0ABF645) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0155847) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155844, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155844) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155844, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP0ABF645) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0155847) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155844, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155844) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155844, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP0ABF645) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155846, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155846) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155846, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0155847) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP0ABF670 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABF672 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABF6MF_0155865 .
?templateMotifSequenceMatchRegionP0ABF670 faldo:begin ?templateMotifSequenceMatchBeginP0ABF671 .
?templateMotifSequenceMatchBeginP0ABF671 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABF666 ;
faldo:reference isoform:P0ABF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABF672 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0155876 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABF6MF_0155867 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0155875 .
?targetMotifMatchRegionMatchBeginMF_0155875 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0155868 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0155876 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155865, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155865) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155865, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP0ABF666) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155867, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155867) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155867, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155867) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0155868) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155865, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155865) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155865, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0ABF666) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155867, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155867) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155867, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155867) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0155868) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse33) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0ABF687 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABF689 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABF6MF_0155882 .
?templateMotifSequenceMatchRegionP0ABF687 faldo:begin ?templateMotifSequenceMatchBeginP0ABF688 .
?templateMotifSequenceMatchBeginP0ABF688 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABF683 ;
faldo:reference isoform:P0ABF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABF689 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0155893 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABF6MF_0155884 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0155892 .
?targetMotifMatchRegionMatchBeginMF_0155892 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0155885 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0155893 edam:has_input signature:MF_01558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABF6MF_0155882, 1, (STRLEN(?templateMotifCigarP0ABF6MF_0155882) - STRLEN(REPLACE(?templateMotifCigarP0ABF6MF_0155882, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP0ABF683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155884, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155884) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABF6MF_0155884, 1, (STRLEN(?targetMotifMatchCigarP0ABF6MF_0155884) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABF6MF_0155884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0155885) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01558a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag97) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag97, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
