| http://purl.uniprot.org/unirules/MF_01602#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:579581 up:source unirule:MF_01602 .
_:579582 up:source unirule:MF_01602 .
_:579583 up:source unirule:MF_01602 .
_:579584 up:source unirule:MF_01602 .
_:579585 up:source unirule:MF_01602 .
_:579586 up:source unirule:MF_01602 .
_:579587 up:source unirule:MF_01602 .
_:579588 up:source unirule:MF_01602 .
_:579589 up:source unirule:MF_01602 .
_:579590 up:source unirule:MF_01602 .
_:579591 up:source unirule:MF_01602 .
_:579592 up:source unirule:MF_01602 .
_:579593 up:source unirule:MF_01602 .
_:579594 up:source unirule:MF_01602 .
_:579595 up:source unirule:MF_01602 .
_:579596 up:source unirule:MF_01602 .
_:579597 up:source unirule:MF_01602 .
_:579598 up:source unirule:MF_01602 .
_:579599 up:source unirule:MF_01602 .
_:579600 up:source unirule:MF_01602 .
_:579601 up:source unirule:MF_01602 .
_:579602 up:source unirule:MF_01602 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0005737 ,
GO:0009249 ,
GO:0016979 ,
keyword:436 ,
keyword:547 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.1.20' ;
up:fullName 'Lipoate-protein ligase A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Lipoate--protein ligase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'lplA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl onto the lipoyl domains of lipoate-dependent enzymes.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; protein lipoylation via exogenous pathway; protein N(6)-(lipoyl)lysine from lipoate: step 1/2.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; protein lipoylation via exogenous pathway; protein N(6)-(lipoyl)lysine from lipoate: step 2/2.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Annotation ;
rdfs:comment 'In the transfer reaction, the free carboxyl group of lipoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LplA family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:30616 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:30616 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:30616 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:83088 .
_:579603 a rdf:Statement ;
up:attribution _:579581 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:579604 a rdf:Statement ;
up:attribution _:579582 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:579605 a rdf:Statement ;
up:attribution _:579583 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:579606 a rdf:Statement ;
up:attribution _:579584 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:579607 a rdf:Statement ;
up:attribution _:579585 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:579608 a rdf:Statement ;
up:attribution _:579586 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:579609 a rdf:Statement ;
up:attribution _:579587 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:579610 a rdf:Statement ;
up:attribution _:579588 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:579611 a rdf:Statement ;
up:attribution _:579589 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:579612 a rdf:Statement ;
up:attribution _:579590 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:579613 a rdf:Statement ;
up:attribution _:579591 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:579614 a rdf:Statement ;
up:attribution _:579592 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:579615 a rdf:Statement ;
up:attribution _:579593 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:579616 a rdf:Statement ;
up:attribution _:579594 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:579617 a rdf:Statement ;
up:attribution _:579595 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:579618 a rdf:Statement ;
up:attribution _:579596 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016979 .
_:579619 a rdf:Statement ;
up:attribution _:579597 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009249 .
_:579620 a rdf:Statement ;
up:attribution _:579598 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:579621 a rdf:Statement ;
up:source unirule:MF_01602 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:579622 a rdf:Statement ;
up:attribution _:579599 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:579623 a rdf:Statement ;
up:source unirule:MF_01602 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:579624 a rdf:Statement ;
up:attribution _:579600 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:579625 a rdf:Statement ;
up:source unirule:MF_01602 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:579626 a rdf:Statement ;
up:attribution _:579601 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:579627 a rdf:Statement ;
up:source unirule:MF_01602 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:579628 a rdf:Statement ;
up:attribution _:579602 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01602
#Rule MF_01602 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01602 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01602a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP3209946 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3209948 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32099MF_0160241 .
?templateMotifSequenceMatchRegionP3209946 faldo:begin ?templateMotifSequenceMatchBeginP3209947 .
?templateMotifSequenceMatchBeginP3209947 faldo:position ?templateMotifSequenceMatchBeginPositionP3209942 ;
faldo:reference isoform:P32099-1 .
?templateMotifSequenceProfileAlignmentOperationP3209948 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0160252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32099MF_0160243 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0160251 .
?targetMotifMatchRegionMatchBeginMF_0160251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0160244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0160252 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32099MF_0160241, 1, (STRLEN(?templateMotifCigarP32099MF_0160241) - STRLEN(REPLACE(?templateMotifCigarP32099MF_0160241, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP3209942) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32099MF_0160243, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160243) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32099MF_0160243, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160243) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0160244) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32099MF_0160241, 1, (STRLEN(?templateMotifCigarP32099MF_0160241) - STRLEN(REPLACE(?templateMotifCigarP32099MF_0160241, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP3209942) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32099MF_0160243, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160243) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32099MF_0160243, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160243) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0160244) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('GAV[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP3209963 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3209965 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32099MF_0160258 .
?templateMotifSequenceMatchRegionP3209963 faldo:begin ?templateMotifSequenceMatchBeginP3209964 .
?templateMotifSequenceMatchBeginP3209964 faldo:position ?templateMotifSequenceMatchBeginPositionP3209959 ;
faldo:reference isoform:P32099-1 .
?templateMotifSequenceProfileAlignmentOperationP3209965 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0160269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32099MF_0160260 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0160268 .
?targetMotifMatchRegionMatchBeginMF_0160268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0160261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0160269 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32099MF_0160258, 1, (STRLEN(?templateMotifCigarP32099MF_0160258) - STRLEN(REPLACE(?templateMotifCigarP32099MF_0160258, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP3209959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32099MF_0160260, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160260) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32099MF_0160260, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160260) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0160261) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP3209978 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3209980 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32099MF_0160273 .
?templateMotifSequenceMatchRegionP3209978 faldo:begin ?templateMotifSequenceMatchBeginP3209979 .
?templateMotifSequenceMatchBeginP3209979 faldo:position ?templateMotifSequenceMatchBeginPositionP3209974 ;
faldo:reference isoform:P32099-1 .
?templateMotifSequenceProfileAlignmentOperationP3209980 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0160284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32099MF_0160275 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0160283 .
?targetMotifMatchRegionMatchBeginMF_0160283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0160276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0160284 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32099MF_0160273, 1, (STRLEN(?templateMotifCigarP32099MF_0160273) - STRLEN(REPLACE(?templateMotifCigarP32099MF_0160273, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP3209974) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32099MF_0160275, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160275) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32099MF_0160275, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160275) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0160276) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP3209993 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3209995 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32099MF_0160288 .
?templateMotifSequenceMatchRegionP3209993 faldo:begin ?templateMotifSequenceMatchBeginP3209994 .
?templateMotifSequenceMatchBeginP3209994 faldo:position ?templateMotifSequenceMatchBeginPositionP3209989 ;
faldo:reference isoform:P32099-1 .
?templateMotifSequenceProfileAlignmentOperationP3209995 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0160299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32099MF_0160290 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0160298 .
?targetMotifMatchRegionMatchBeginMF_0160298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0160291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0160299 edam:has_input signature:MF_01602 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32099MF_0160288, 1, (STRLEN(?templateMotifCigarP32099MF_0160288) - STRLEN(REPLACE(?templateMotifCigarP32099MF_0160288, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP3209989) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32099MF_0160290, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160290) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32099MF_0160290, 1, (STRLEN(?targetMotifMatchCigarP32099MF_0160290) - STRLEN(REPLACE(?targetMotifMatchCigarP32099MF_0160290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0160291) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01602a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
