| http://purl.uniprot.org/unirules/MF_01618#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:585466 up:source unirule:MF_01618 .
_:585467 up:source unirule:MF_01618 .
_:585468 up:source unirule:MF_01618 .
_:585469 up:source unirule:MF_01618 .
_:585470 up:source unirule:MF_01618 .
_:585471 up:source unirule:MF_01618 .
_:585472 up:source unirule:MF_01618 .
_:585473 up:source unirule:MF_01618 .
_:585474 up:source unirule:MF_01618 .
_:585475 up:source unirule:MF_01618 .
_:585476 up:source unirule:MF_01618 .
_:585477 up:source unirule:MF_01618 .
_:585478 up:source unirule:MF_01618 .
_:585479 up:source unirule:MF_01618 .
_:585480 up:source unirule:MF_01618 .
_:585481 up:source unirule:MF_01618 .
_:585482 up:source unirule:MF_01618 .
_:585483 up:source unirule:MF_01618 .
_:585484 up:source unirule:MF_01618 .
_:585485 up:source unirule:MF_01618 .
_:585486 up:source unirule:MF_01618 .
_:585487 up:source unirule:MF_01618 .
_:585488 up:source unirule:MF_01618 .
_:585489 up:source unirule:MF_01618 .
_:585490 up:source unirule:MF_01618 .
_:585491 up:source unirule:MF_01618 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation14 ;
up:classifiedWith GO:0003988 ,
GO:0005737 ,
GO:0006635 ,
GO:0016042 ,
keyword:12 ,
keyword:276 ,
keyword:442 ,
keyword:443 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.16' ;
up:fullName '3-ketoacyl-CoA thiolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ACSs' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Acetyl-CoA acyltransferase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Acyl-CoA ligase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Beta-ketothiolase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'Fatty acid oxidation complex subunit beta' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'fadI' .
?annotation7 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.' .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; fatty acid beta-oxidation.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer of two alpha chains (FadJ) and two beta chains (FadI).' .
?annotation12 a up:Subcellular_Location_Annotation .
?annotation12li13 up:cellularComponent .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thiolase-like superfamily. Thiolase family.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-thioester intermediate' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
_:585492 a rdf:Statement ;
up:attribution _:585466 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:585493 a rdf:Statement ;
up:attribution _:585467 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:585494 a rdf:Statement ;
up:attribution _:585468 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:585495 a rdf:Statement ;
up:attribution _:585469 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:585496 a rdf:Statement ;
up:attribution _:585470 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:585497 a rdf:Statement ;
up:attribution _:585471 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:585498 a rdf:Statement ;
up:attribution _:585472 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:585499 a rdf:Statement ;
up:attribution _:585473 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:585500 a rdf:Statement ;
up:attribution _:585474 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:585501 a rdf:Statement ;
up:attribution _:585475 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:585502 a rdf:Statement ;
up:attribution _:585476 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:585503 a rdf:Statement ;
up:attribution _:585477 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:585504 a rdf:Statement ;
up:attribution _:585478 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:585505 a rdf:Statement ;
up:attribution _:585479 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:585506 a rdf:Statement ;
up:attribution _:585480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:585507 a rdf:Statement ;
up:attribution _:585481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:585508 a rdf:Statement ;
up:attribution _:585482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:442 .
_:585509 a rdf:Statement ;
up:attribution _:585483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:585510 a rdf:Statement ;
up:attribution _:585484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:585511 a rdf:Statement ;
up:attribution _:585485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003988 .
_:585512 a rdf:Statement ;
up:attribution _:585486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006635 .
_:585513 a rdf:Statement ;
up:attribution _:585487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016042 .
_:585514 a rdf:Statement ;
up:attribution _:585488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:585515 a rdf:Statement ;
up:source unirule:MF_01618 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:585516 a rdf:Statement ;
up:attribution _:585489 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:585517 a rdf:Statement ;
up:source unirule:MF_01618 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:585518 a rdf:Statement ;
up:attribution _:585490 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:585519 a rdf:Statement ;
up:source unirule:MF_01618 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:585520 a rdf:Statement ;
up:attribution _:585491 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01618
#Rule MF_01618 Created by:? on:2005-11-11 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01618 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01618a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP7650338 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7650340 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76503MF_0161833 .
?templateMotifSequenceMatchRegionP7650338 faldo:begin ?templateMotifSequenceMatchBeginP7650339 .
?templateMotifSequenceMatchBeginP7650339 faldo:position ?templateMotifSequenceMatchBeginPositionP7650334 ;
faldo:reference isoform:P76503-1 .
?templateMotifSequenceProfileAlignmentOperationP7650340 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161844 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76503MF_0161835 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161843 .
?targetMotifMatchRegionMatchBeginMF_0161843 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161836 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161844 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76503MF_0161833, 1, (STRLEN(?templateMotifCigarP76503MF_0161833) - STRLEN(REPLACE(?templateMotifCigarP76503MF_0161833, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP7650334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76503MF_0161835, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161835) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76503MF_0161835, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161835) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161835, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0161836) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP7650353 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7650355 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76503MF_0161848 .
?templateMotifSequenceMatchRegionP7650353 faldo:begin ?templateMotifSequenceMatchBeginP7650354 .
?templateMotifSequenceMatchBeginP7650354 faldo:position ?templateMotifSequenceMatchBeginPositionP7650349 ;
faldo:reference isoform:P76503-1 .
?templateMotifSequenceProfileAlignmentOperationP7650355 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161859 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76503MF_0161850 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161858 .
?targetMotifMatchRegionMatchBeginMF_0161858 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161851 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161859 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76503MF_0161848, 1, (STRLEN(?templateMotifCigarP76503MF_0161848) - STRLEN(REPLACE(?templateMotifCigarP76503MF_0161848, CONCAT('^(?:-*[^-]){', STR(((392 - ?templateMotifSequenceMatchBeginPositionP7650349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76503MF_0161850, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161850) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76503MF_0161850, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161850) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161850, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0161851) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP7650368 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7650370 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76503MF_0161863 .
?templateMotifSequenceMatchRegionP7650368 faldo:begin ?templateMotifSequenceMatchBeginP7650369 .
?templateMotifSequenceMatchBeginP7650369 faldo:position ?templateMotifSequenceMatchBeginPositionP7650364 ;
faldo:reference isoform:P76503-1 .
?templateMotifSequenceProfileAlignmentOperationP7650370 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161874 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76503MF_0161865 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161873 .
?targetMotifMatchRegionMatchBeginMF_0161873 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161866 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161874 edam:has_input signature:MF_01618 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76503MF_0161863, 1, (STRLEN(?templateMotifCigarP76503MF_0161863) - STRLEN(REPLACE(?templateMotifCigarP76503MF_0161863, CONCAT('^(?:-*[^-]){', STR(((422 - ?templateMotifSequenceMatchBeginPositionP7650364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76503MF_0161865, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161865) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76503MF_0161865, 1, (STRLEN(?targetMotifMatchCigarP76503MF_0161865) - STRLEN(REPLACE(?targetMotifMatchCigarP76503MF_0161865, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0161866) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01618a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
}
"xsd:string |
