| http://purl.uniprot.org/unirules/MF_01620#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:586378 up:source unirule:MF_01620 .
_:586379 up:source unirule:MF_01620 .
_:586380 up:source unirule:MF_01620 .
_:586381 up:source unirule:MF_01620 .
_:586382 up:source unirule:MF_01620 .
_:586383 up:source unirule:MF_01620 .
_:586384 up:source unirule:MF_01620 .
_:586385 up:source unirule:MF_01620 .
_:586386 up:source unirule:MF_01620 .
_:586387 up:source unirule:MF_01620 .
_:586388 up:source unirule:MF_01620 .
_:586389 up:source unirule:MF_01620 .
_:586390 up:source unirule:MF_01620 .
_:586391 up:source unirule:MF_01620 .
_:586392 up:source unirule:MF_01620 .
_:586393 up:source unirule:MF_01620 .
_:586394 up:source unirule:MF_01620 .
_:586395 up:source unirule:MF_01620 .
_:586396 up:source unirule:MF_01620 .
_:586397 up:source unirule:MF_01620 .
_:586398 up:source unirule:MF_01620 .
_:586399 up:source unirule:MF_01620 .
_:586400 up:source unirule:MF_01620 .
_:586401 up:source unirule:MF_01620 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0003988 ,
GO:0005737 ,
GO:0006635 ,
GO:0016042 ,
keyword:12 ,
keyword:276 ,
keyword:442 ,
keyword:443 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.16' ;
up:fullName '3-ketoacyl-CoA thiolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Acetyl-CoA acyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Beta-ketothiolase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Fatty acid oxidation complex subunit beta' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'fadA' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; fatty acid beta-oxidation.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer of two alpha chains (FadB) and two beta chains (FadA).' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thiolase-like superfamily. Thiolase family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-thioester intermediate' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
_:586402 a rdf:Statement ;
up:attribution _:586378 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:586403 a rdf:Statement ;
up:attribution _:586379 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:586404 a rdf:Statement ;
up:attribution _:586380 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:586405 a rdf:Statement ;
up:attribution _:586381 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:586406 a rdf:Statement ;
up:attribution _:586382 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:586407 a rdf:Statement ;
up:attribution _:586383 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:586408 a rdf:Statement ;
up:attribution _:586384 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:586409 a rdf:Statement ;
up:attribution _:586385 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:586410 a rdf:Statement ;
up:attribution _:586386 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:586411 a rdf:Statement ;
up:attribution _:586387 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:586412 a rdf:Statement ;
up:attribution _:586388 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:586413 a rdf:Statement ;
up:attribution _:586389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:586414 a rdf:Statement ;
up:attribution _:586390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:586415 a rdf:Statement ;
up:attribution _:586391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:586416 a rdf:Statement ;
up:attribution _:586392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:442 .
_:586417 a rdf:Statement ;
up:attribution _:586393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:586418 a rdf:Statement ;
up:attribution _:586394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:586419 a rdf:Statement ;
up:attribution _:586395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003988 .
_:586420 a rdf:Statement ;
up:attribution _:586396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006635 .
_:586421 a rdf:Statement ;
up:attribution _:586397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016042 .
_:586422 a rdf:Statement ;
up:attribution _:586398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:586423 a rdf:Statement ;
up:source unirule:MF_01620 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:586424 a rdf:Statement ;
up:attribution _:586399 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:586425 a rdf:Statement ;
up:source unirule:MF_01620 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:586426 a rdf:Statement ;
up:attribution _:586400 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:586427 a rdf:Statement ;
up:source unirule:MF_01620 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:586428 a rdf:Statement ;
up:attribution _:586401 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01620
#Rule MF_01620 Created by:? on:2005-11-18 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01620 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01620a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP2115136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2115138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21151MF_0162031 .
?templateMotifSequenceMatchRegionP2115136 faldo:begin ?templateMotifSequenceMatchBeginP2115137 .
?templateMotifSequenceMatchBeginP2115137 faldo:position ?templateMotifSequenceMatchBeginPositionP2115132 ;
faldo:reference isoform:P21151-1 .
?templateMotifSequenceProfileAlignmentOperationP2115138 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162042 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21151MF_0162033 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162041 .
?targetMotifMatchRegionMatchBeginMF_0162041 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162034 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162042 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21151MF_0162031, 1, (STRLEN(?templateMotifCigarP21151MF_0162031) - STRLEN(REPLACE(?templateMotifCigarP21151MF_0162031, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP2115132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21151MF_0162033, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162033) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21151MF_0162033, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162033) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162033, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0162034) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP2115151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2115153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21151MF_0162046 .
?templateMotifSequenceMatchRegionP2115151 faldo:begin ?templateMotifSequenceMatchBeginP2115152 .
?templateMotifSequenceMatchBeginP2115152 faldo:position ?templateMotifSequenceMatchBeginPositionP2115147 ;
faldo:reference isoform:P21151-1 .
?templateMotifSequenceProfileAlignmentOperationP2115153 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162057 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21151MF_0162048 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162056 .
?targetMotifMatchRegionMatchBeginMF_0162056 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162049 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162057 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21151MF_0162046, 1, (STRLEN(?templateMotifCigarP21151MF_0162046) - STRLEN(REPLACE(?templateMotifCigarP21151MF_0162046, CONCAT('^(?:-*[^-]){', STR(((343 - ?templateMotifSequenceMatchBeginPositionP2115147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21151MF_0162048, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162048) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21151MF_0162048, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162048) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0162049) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP2115166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2115168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP21151MF_0162061 .
?templateMotifSequenceMatchRegionP2115166 faldo:begin ?templateMotifSequenceMatchBeginP2115167 .
?templateMotifSequenceMatchBeginP2115167 faldo:position ?templateMotifSequenceMatchBeginPositionP2115162 ;
faldo:reference isoform:P21151-1 .
?templateMotifSequenceProfileAlignmentOperationP2115168 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162072 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP21151MF_0162063 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162071 .
?targetMotifMatchRegionMatchBeginMF_0162071 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162064 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162072 edam:has_input signature:MF_01620 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP21151MF_0162061, 1, (STRLEN(?templateMotifCigarP21151MF_0162061) - STRLEN(REPLACE(?templateMotifCigarP21151MF_0162061, CONCAT('^(?:-*[^-]){', STR(((373 - ?templateMotifSequenceMatchBeginPositionP2115162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP21151MF_0162063, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162063) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162063, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP21151MF_0162063, 1, (STRLEN(?targetMotifMatchCigarP21151MF_0162063) - STRLEN(REPLACE(?targetMotifMatchCigarP21151MF_0162063, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0162064) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01620a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
}
"xsd:string |
