| http://purl.uniprot.org/unirules/MF_01647#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:601338 up:source unirule:MF_01647 .
_:601339 up:source unirule:MF_01647 .
_:601340 up:source unirule:MF_01647 .
_:601341 up:source unirule:MF_01647 .
_:601342 up:source unirule:MF_01647 .
_:601343 up:source unirule:MF_01647 .
_:601344 up:source unirule:MF_01647 .
_:601345 up:source unirule:MF_01647 .
_:601346 up:source unirule:MF_01647 .
_:601347 up:source unirule:MF_01647 .
_:601348 up:source unirule:MF_01647 .
_:601349 up:source unirule:MF_01647 .
_:601350 up:source unirule:MF_01647 .
_:601351 up:source unirule:MF_01647 .
_:601352 up:source unirule:MF_01647 .
_:601353 up:source unirule:MF_01647 .
_:601354 up:source unirule:MF_01647 .
_:601355 up:source unirule:MF_01647 .
_:601356 up:source unirule:MF_01647 .
_:601357 up:source unirule:MF_01647 .
_:601358 up:source unirule:MF_01647 .
_:601359 up:source unirule:MF_01647 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ,
?name6 ;
up:annotation ?annotation8 ,
?annotation9 ,
?annotation11 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0016491 ,
GO:0018498 ,
GO:0019380 ,
keyword:520 ,
keyword:560 ,
keyword:58 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.3.1.87' ;
up:fullName '3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'CI-dihydrodiol dehydrogenase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Cis-3-(2-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'Cis-3-(2-carboxyethyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'PP-dihydrodiol dehydrogenase' ;
rdf:type up:Structured_Name .
?gene7 skos:prefLabel 'hcaB' .
?annotation8 a up:Function_Annotation ;
rdfs:comment 'Converts 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propanoic acid (DHPP) and 2,3-dihydroxicinnamic acid (DHCI), respectively.' .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity ;
up:enzymeClass .
?annotation11 up:activity ?activity12 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity12 up:catalyticActivity ;
up:enzymeClass .
?annotation13 a up:Pathway_Annotation ;
rdfs:comment 'Aromatic compound metabolism; 3-phenylpropanoate degradation.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the short-chain dehydrogenases/reductases (SDR) family.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57540 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf ?molecule33 .
?molecule33 rdfs:label 'substrate' .
_:601360 a rdf:Statement ;
up:attribution _:601338 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:601361 a rdf:Statement ;
up:attribution _:601339 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:601362 a rdf:Statement ;
up:attribution _:601340 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:601363 a rdf:Statement ;
up:attribution _:601341 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:601364 a rdf:Statement ;
up:attribution _:601342 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:601365 a rdf:Statement ;
up:attribution _:601343 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:601366 a rdf:Statement ;
up:attribution _:601344 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:601367 a rdf:Statement ;
up:attribution _:601345 ;
rdf:subject ?gene7 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene7 .
_:601368 a rdf:Statement ;
up:attribution _:601346 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:601369 a rdf:Statement ;
up:attribution _:601347 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:601370 a rdf:Statement ;
up:attribution _:601348 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:601371 a rdf:Statement ;
up:attribution _:601349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:601372 a rdf:Statement ;
up:attribution _:601350 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:601373 a rdf:Statement ;
up:attribution _:601351 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:601374 a rdf:Statement ;
up:attribution _:601352 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:601375 a rdf:Statement ;
up:attribution _:601353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:601376 a rdf:Statement ;
up:attribution _:601354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016491 .
_:601377 a rdf:Statement ;
up:attribution _:601355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018498 .
_:601378 a rdf:Statement ;
up:attribution _:601356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019380 .
_:601379 a rdf:Statement ;
up:source unirule:MF_01647 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:601380 a rdf:Statement ;
up:attribution _:601357 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:601381 a rdf:Statement ;
up:source unirule:MF_01647 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:601382 a rdf:Statement ;
up:attribution _:601358 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:601383 a rdf:Statement ;
up:source unirule:MF_01647 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:601384 a rdf:Statement ;
up:attribution _:601359 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01647
#Rule MF_01647 Created by:? on:2008-04-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01647 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01647a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP0CI3141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0CI3143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0CI31MF_0164736 .
?templateMotifSequenceMatchRegionP0CI3141 faldo:begin ?templateMotifSequenceMatchBeginP0CI3142 .
?templateMotifSequenceMatchBeginP0CI3142 faldo:position ?templateMotifSequenceMatchBeginPositionP0CI3137 ;
faldo:reference isoform:P0CI31-1 .
?templateMotifSequenceProfileAlignmentOperationP0CI3143 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164747 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0CI31MF_0164738 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164746 .
?targetMotifMatchRegionMatchBeginMF_0164746 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164739 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164747 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CI31MF_0164736, 1, (STRLEN(?templateMotifCigarP0CI31MF_0164736) - STRLEN(REPLACE(?templateMotifCigarP0CI31MF_0164736, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0CI3137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164738, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164738) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164738, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164738) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0164739) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CI31MF_0164736, 1, (STRLEN(?templateMotifCigarP0CI31MF_0164736) - STRLEN(REPLACE(?templateMotifCigarP0CI31MF_0164736, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP0CI3137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164738, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164738) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164738, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164738) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0164739) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0CI3158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0CI3160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0CI31MF_0164753 .
?templateMotifSequenceMatchRegionP0CI3158 faldo:begin ?templateMotifSequenceMatchBeginP0CI3159 .
?templateMotifSequenceMatchBeginP0CI3159 faldo:position ?templateMotifSequenceMatchBeginPositionP0CI3154 ;
faldo:reference isoform:P0CI31-1 .
?templateMotifSequenceProfileAlignmentOperationP0CI3160 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164764 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0CI31MF_0164755 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164763 .
?targetMotifMatchRegionMatchBeginMF_0164763 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164756 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164764 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CI31MF_0164753, 1, (STRLEN(?templateMotifCigarP0CI31MF_0164753) - STRLEN(REPLACE(?templateMotifCigarP0CI31MF_0164753, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0CI3154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164755, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164755) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164755, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164755) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0164756) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0CI3173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0CI3175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0CI31MF_0164768 .
?templateMotifSequenceMatchRegionP0CI3173 faldo:begin ?templateMotifSequenceMatchBeginP0CI3174 .
?templateMotifSequenceMatchBeginP0CI3174 faldo:position ?templateMotifSequenceMatchBeginPositionP0CI3169 ;
faldo:reference isoform:P0CI31-1 .
?templateMotifSequenceProfileAlignmentOperationP0CI3175 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0CI31MF_0164770 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164778 .
?targetMotifMatchRegionMatchBeginMF_0164778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164779 edam:has_input signature:MF_01647 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CI31MF_0164768, 1, (STRLEN(?templateMotifCigarP0CI31MF_0164768) - STRLEN(REPLACE(?templateMotifCigarP0CI31MF_0164768, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP0CI3169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164770, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164770) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CI31MF_0164770, 1, (STRLEN(?targetMotifMatchCigarP0CI31MF_0164770) - STRLEN(REPLACE(?targetMotifMatchCigarP0CI31MF_0164770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0164771) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01647a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
