| http://purl.uniprot.org/unirules/MF_01669#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:609558 up:source unirule:MF_01669 .
_:609559 up:source unirule:MF_01669 .
_:609560 up:source unirule:MF_01669 .
_:609561 up:source unirule:MF_01669 .
_:609562 up:source unirule:MF_01669 .
_:609563 up:source unirule:MF_01669 .
_:609564 up:source unirule:MF_01669 .
_:609565 up:source unirule:MF_01669 .
_:609566 up:source unirule:MF_01669 .
_:609567 up:source unirule:MF_01669 .
_:609568 up:source unirule:MF_01669 .
_:609569 up:source unirule:MF_01669 .
_:609570 up:source unirule:MF_01669 .
_:609571 up:source unirule:MF_01669 .
_:609572 up:source unirule:MF_01669 .
_:609573 up:source unirule:MF_01669 .
_:609574 up:source unirule:MF_01669 .
_:609575 up:source unirule:MF_01669 .
_:609576 up:source unirule:MF_01669 .
_:609577 up:source unirule:MF_01669 .
_:609578 up:source unirule:MF_01669 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0016787 ,
GO:0019310 ,
GO:0030976 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:520 ,
keyword:786 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.7.1.22' ;
up:fullName '3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase' ;
up:shortName 'THcHDO hydrolase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'iolD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation6 up:cofactor chebi:58937 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 thiamine pyrophosphate per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Polyol metabolism; myo-inositol degradation into acetyl-CoA; acetyl-CoA from myo-inositol: step 3/7.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TPP enzyme family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Thiamine pyrophosphate binding' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:18420 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:58937 .
_:609579 a rdf:Statement ;
up:attribution _:609558 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:609580 a rdf:Statement ;
up:attribution _:609559 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:609581 a rdf:Statement ;
up:attribution _:609560 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:609582 a rdf:Statement ;
up:attribution _:609561 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:609583 a rdf:Statement ;
up:attribution _:609562 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:609584 a rdf:Statement ;
up:attribution _:609563 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:609585 a rdf:Statement ;
up:attribution _:609564 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:609586 a rdf:Statement ;
up:attribution _:609565 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:609587 a rdf:Statement ;
up:attribution _:609566 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:609588 a rdf:Statement ;
up:attribution _:609567 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:609589 a rdf:Statement ;
up:attribution _:609568 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:609590 a rdf:Statement ;
up:attribution _:609569 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:609591 a rdf:Statement ;
up:attribution _:609570 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:786 .
_:609592 a rdf:Statement ;
up:attribution _:609571 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:609593 a rdf:Statement ;
up:attribution _:609572 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016787 .
_:609594 a rdf:Statement ;
up:attribution _:609573 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030976 .
_:609595 a rdf:Statement ;
up:attribution _:609574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019310 .
_:609596 a rdf:Statement ;
up:source unirule:MF_01669 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:609597 a rdf:Statement ;
up:attribution _:609575 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:609598 a rdf:Statement ;
up:source unirule:MF_01669 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:609599 a rdf:Statement ;
up:attribution _:609576 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:609600 a rdf:Statement ;
up:source unirule:MF_01669 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:609601 a rdf:Statement ;
up:attribution _:609577 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:609602 a rdf:Statement ;
up:source unirule:MF_01669 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:609603 a rdf:Statement ;
up:attribution _:609578 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01669
#Rule MF_01669 Created by:? on:2008-09-29 Modified by:Edouard de Castro on:2023-01-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01669 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01669a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP4241541 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4241543 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42415MF_0166936 .
?templateMotifSequenceMatchRegionP4241541 faldo:begin ?templateMotifSequenceMatchBeginP4241542 .
?templateMotifSequenceMatchBeginP4241542 faldo:position ?templateMotifSequenceMatchBeginPositionP4241537 ;
faldo:reference isoform:P42415-1 .
?templateMotifSequenceProfileAlignmentOperationP4241543 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0166947 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42415MF_0166938 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0166946 .
?targetMotifMatchRegionMatchBeginMF_0166946 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0166939 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0166947 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42415MF_0166936, 1, (STRLEN(?templateMotifCigarP42415MF_0166936) - STRLEN(REPLACE(?templateMotifCigarP42415MF_0166936, CONCAT('^(?:-*[^-]){', STR(((442 - ?templateMotifSequenceMatchBeginPositionP4241537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42415MF_0166938, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166938) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42415MF_0166938, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166938) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0166939) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42415MF_0166936, 1, (STRLEN(?templateMotifCigarP42415MF_0166936) - STRLEN(REPLACE(?templateMotifCigarP42415MF_0166936, CONCAT('^(?:-*[^-]){', STR(((522 - ?templateMotifSequenceMatchBeginPositionP4241537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42415MF_0166938, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166938) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42415MF_0166938, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166938) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0166939) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP4241558 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4241560 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42415MF_0166953 .
?templateMotifSequenceMatchRegionP4241558 faldo:begin ?templateMotifSequenceMatchBeginP4241559 .
?templateMotifSequenceMatchBeginP4241559 faldo:position ?templateMotifSequenceMatchBeginPositionP4241554 ;
faldo:reference isoform:P42415-1 .
?templateMotifSequenceProfileAlignmentOperationP4241560 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0166964 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42415MF_0166955 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0166963 .
?targetMotifMatchRegionMatchBeginMF_0166963 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0166956 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0166964 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42415MF_0166953, 1, (STRLEN(?templateMotifCigarP42415MF_0166953) - STRLEN(REPLACE(?templateMotifCigarP42415MF_0166953, CONCAT('^(?:-*[^-]){', STR(((493 - ?templateMotifSequenceMatchBeginPositionP4241554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42415MF_0166955, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166955) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42415MF_0166955, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166955) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166955, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0166956) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP4241573 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4241575 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42415MF_0166968 .
?templateMotifSequenceMatchRegionP4241573 faldo:begin ?templateMotifSequenceMatchBeginP4241574 .
?templateMotifSequenceMatchBeginP4241574 faldo:position ?templateMotifSequenceMatchBeginPositionP4241569 ;
faldo:reference isoform:P42415-1 .
?templateMotifSequenceProfileAlignmentOperationP4241575 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0166979 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42415MF_0166970 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0166978 .
?targetMotifMatchRegionMatchBeginMF_0166978 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0166971 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0166979 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42415MF_0166968, 1, (STRLEN(?templateMotifCigarP42415MF_0166968) - STRLEN(REPLACE(?templateMotifCigarP42415MF_0166968, CONCAT('^(?:-*[^-]){', STR(((520 - ?templateMotifSequenceMatchBeginPositionP4241569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42415MF_0166970, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166970) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42415MF_0166970, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166970) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0166971) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP4241588 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4241590 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42415MF_0166983 .
?templateMotifSequenceMatchRegionP4241588 faldo:begin ?templateMotifSequenceMatchBeginP4241589 .
?templateMotifSequenceMatchBeginP4241589 faldo:position ?templateMotifSequenceMatchBeginPositionP4241584 ;
faldo:reference isoform:P42415-1 .
?templateMotifSequenceProfileAlignmentOperationP4241590 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0166994 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42415MF_0166985 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0166993 .
?targetMotifMatchRegionMatchBeginMF_0166993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0166986 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0166994 edam:has_input signature:MF_01669 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42415MF_0166983, 1, (STRLEN(?templateMotifCigarP42415MF_0166983) - STRLEN(REPLACE(?templateMotifCigarP42415MF_0166983, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP4241584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42415MF_0166985, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166985) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42415MF_0166985, 1, (STRLEN(?targetMotifMatchCigarP42415MF_0166985) - STRLEN(REPLACE(?targetMotifMatchCigarP42415MF_0166985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0166986) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01669a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
}
"xsd:string |
