| http://purl.uniprot.org/unirules/MF_01683#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:614759 up:source unirule:MF_01683 .
_:614760 up:source unirule:MF_01683 .
_:614761 up:source unirule:MF_01683 .
_:614762 up:source unirule:MF_01683 .
_:614763 up:source unirule:MF_01683 .
_:614764 up:source unirule:MF_01683 .
_:614765 up:source unirule:MF_01683 .
_:614766 up:source unirule:MF_01683 .
_:614767 up:source unirule:MF_01683 .
_:614768 up:source unirule:MF_01683 .
_:614769 up:source unirule:MF_01683 .
_:614770 up:source unirule:MF_01683 .
_:614771 up:source unirule:MF_01683 .
_:614772 up:source unirule:MF_01683 .
_:614773 up:source unirule:MF_01683 .
_:614774 up:source unirule:MF_01683 .
_:614775 up:source unirule:MF_01683 .
_:614776 up:source unirule:MF_01683 .
_:614777 up:source unirule:MF_01683 .
_:614778 up:source unirule:MF_01683 .
_:614779 up:source unirule:MF_01683 .
_:614780 up:source unirule:MF_01683 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005524 ,
GO:0019509 ,
GO:0046522 ,
keyword:28 ,
keyword:418 ,
keyword:486 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.100' ;
up:fullName 'Methylthioribose kinase' ;
up:shortName 'MTR kinase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'mtnK' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment "Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 2/2." .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methylthioribose kinase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf ?molecule41 .
?molecule41 rdfs:label 'substrate' .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf ?molecule49 .
?molecule49 rdfs:label 'substrate' .
_:614781 a rdf:Statement ;
up:attribution _:614759 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:614782 a rdf:Statement ;
up:attribution _:614760 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:614783 a rdf:Statement ;
up:attribution _:614761 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:614784 a rdf:Statement ;
up:attribution _:614762 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:614785 a rdf:Statement ;
up:attribution _:614763 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:614786 a rdf:Statement ;
up:attribution _:614764 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:614787 a rdf:Statement ;
up:attribution _:614765 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:614788 a rdf:Statement ;
up:attribution _:614766 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:614789 a rdf:Statement ;
up:attribution _:614767 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:614790 a rdf:Statement ;
up:attribution _:614768 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:614791 a rdf:Statement ;
up:attribution _:614769 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:614792 a rdf:Statement ;
up:attribution _:614770 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:614793 a rdf:Statement ;
up:attribution _:614771 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:614794 a rdf:Statement ;
up:attribution _:614772 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:614795 a rdf:Statement ;
up:attribution _:614773 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046522 .
_:614796 a rdf:Statement ;
up:attribution _:614774 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:614797 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:614798 a rdf:Statement ;
up:attribution _:614775 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:614799 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:614800 a rdf:Statement ;
up:attribution _:614776 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:614801 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:614802 a rdf:Statement ;
up:attribution _:614777 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:614803 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:614804 a rdf:Statement ;
up:attribution _:614778 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:614805 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:614806 a rdf:Statement ;
up:attribution _:614779 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:614807 a rdf:Statement ;
up:source unirule:MF_01683 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:614808 a rdf:Statement ;
up:attribution _:614780 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01683
#Rule MF_01683 Created by:? on:2008-11-19 Modified by:Edouard de Castro on:2024-09-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01683 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01683a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionO3166357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3166359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_0168352 .
?templateMotifSequenceMatchRegionO3166357 faldo:begin ?templateMotifSequenceMatchBeginO3166358 .
?templateMotifSequenceMatchBeginO3166358 faldo:position ?templateMotifSequenceMatchBeginPositionO3166353 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO3166359 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_0168354 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168362 .
?targetMotifMatchRegionMatchBeginMF_0168362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168363 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_0168352, 1, (STRLEN(?templateMotifCigarO31663MF_0168352) - STRLEN(REPLACE(?templateMotifCigarO31663MF_0168352, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionO3166353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_0168354, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168354) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_0168354, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168354) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0168355) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_0168352, 1, (STRLEN(?templateMotifCigarO31663MF_0168352) - STRLEN(REPLACE(?templateMotifCigarO31663MF_0168352, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionO3166353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_0168354, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168354) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_0168354, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168354) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0168355) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)) = 'EDL')) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionO3166374 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3166376 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_0168369 .
?templateMotifSequenceMatchRegionO3166374 faldo:begin ?templateMotifSequenceMatchBeginO3166375 .
?templateMotifSequenceMatchBeginO3166375 faldo:position ?templateMotifSequenceMatchBeginPositionO3166370 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO3166376 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168380 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_0168371 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168379 .
?targetMotifMatchRegionMatchBeginMF_0168379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168372 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168380 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_0168369, 1, (STRLEN(?templateMotifCigarO31663MF_0168369) - STRLEN(REPLACE(?templateMotifCigarO31663MF_0168369, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionO3166370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_0168371, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168371) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_0168371, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168371) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0168372) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_0168369, 1, (STRLEN(?templateMotifCigarO31663MF_0168369) - STRLEN(REPLACE(?templateMotifCigarO31663MF_0168369, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionO3166370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_0168371, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168371) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_0168371, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168371) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0168372) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('D[AP]E', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionO3166391 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3166393 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_0168386 .
?templateMotifSequenceMatchRegionO3166391 faldo:begin ?templateMotifSequenceMatchBeginO3166392 .
?templateMotifSequenceMatchBeginO3166392 faldo:position ?templateMotifSequenceMatchBeginPositionO3166387 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO3166393 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0168397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_0168388 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168396 .
?targetMotifMatchRegionMatchBeginMF_0168396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0168397 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_0168386, 1, (STRLEN(?templateMotifCigarO31663MF_0168386) - STRLEN(REPLACE(?templateMotifCigarO31663MF_0168386, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionO3166387) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_0168388, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168388) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_0168388, 1, (STRLEN(?targetMotifMatchCigarO31663MF_0168388) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_0168388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0168389) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionO31663106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31663108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_01683101 .
?templateMotifSequenceMatchRegionO31663106 faldo:begin ?templateMotifSequenceMatchBeginO31663107 .
?templateMotifSequenceMatchBeginO31663107 faldo:position ?templateMotifSequenceMatchBeginPositionO31663102 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO31663108 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01683112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_01683103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01683111 .
?targetMotifMatchRegionMatchBeginMF_01683111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01683104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01683112 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_01683101, 1, (STRLEN(?templateMotifCigarO31663MF_01683101) - STRLEN(REPLACE(?templateMotifCigarO31663MF_01683101, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionO31663102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_01683103, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683103) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_01683103, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683103) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01683104) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionO31663121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31663123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_01683116 .
?templateMotifSequenceMatchRegionO31663121 faldo:begin ?templateMotifSequenceMatchBeginO31663122 .
?templateMotifSequenceMatchBeginO31663122 faldo:position ?templateMotifSequenceMatchBeginPositionO31663117 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO31663123 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01683127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_01683118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01683126 .
?targetMotifMatchRegionMatchBeginMF_01683126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01683119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01683127 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_01683116, 1, (STRLEN(?templateMotifCigarO31663MF_01683116) - STRLEN(REPLACE(?templateMotifCigarO31663MF_01683116, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionO31663117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_01683118, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683118) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_01683118, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683118) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01683119) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionO31663136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31663138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31663MF_01683131 .
?templateMotifSequenceMatchRegionO31663136 faldo:begin ?templateMotifSequenceMatchBeginO31663137 .
?templateMotifSequenceMatchBeginO31663137 faldo:position ?templateMotifSequenceMatchBeginPositionO31663132 ;
faldo:reference isoform:O31663-1 .
?templateMotifSequenceProfileAlignmentOperationO31663138 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01683142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31663MF_01683133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01683141 .
?targetMotifMatchRegionMatchBeginMF_01683141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01683134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01683142 edam:has_input signature:MF_01683 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31663MF_01683131, 1, (STRLEN(?templateMotifCigarO31663MF_01683131) - STRLEN(REPLACE(?templateMotifCigarO31663MF_01683131, CONCAT('^(?:-*[^-]){', STR(((340 - ?templateMotifSequenceMatchBeginPositionO31663132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31663MF_01683133, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683133) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31663MF_01683133, 1, (STRLEN(?targetMotifMatchCigarO31663MF_01683133) - STRLEN(REPLACE(?targetMotifMatchCigarO31663MF_01683133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01683134) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01683a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
