| http://purl.uniprot.org/unirules/MF_01699#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:622185 up:source unirule:MF_01699 .
_:622186 up:source unirule:MF_01699 .
_:622187 up:source unirule:MF_01699 .
_:622188 up:source unirule:MF_01699 .
_:622189 up:source unirule:MF_01699 .
_:622190 up:source unirule:MF_01699 .
_:622191 up:source unirule:MF_01699 .
_:622192 up:source unirule:MF_01699 .
_:622193 up:source unirule:MF_01699 .
_:622194 up:source unirule:MF_01699 .
_:622195 up:source unirule:MF_01699 .
_:622196 up:source unirule:MF_01699 .
_:622197 up:source unirule:MF_01699 .
_:622198 up:source unirule:MF_01699 .
_:622199 up:source unirule:MF_01699 .
_:622200 up:source unirule:MF_01699 .
_:622201 up:source unirule:MF_01699 .
_:622202 up:source unirule:MF_01699 .
_:622203 up:source unirule:MF_01699 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004497 ,
GO:0006212 ,
GO:0019740 ,
keyword:285 ,
keyword:288 ,
keyword:503 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.99.46' ;
up:fullName 'Pyrimidine monooxygenase RutA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rutA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism, adding oxygen atoms in the process to yield ureidoacrylate peracid, that immediately reacts with FMN forming ureidoacrylate and FMN-N(5)-oxide. The FMN-N(5)-oxide reacts spontaneously with NADH to produce FMN. Requires the flavin reductase RutF to regenerate FMN in vivo.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NtaA/SnaA/DszA monooxygenase family. RutA subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58210 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58210 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58210 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58210 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58210 .
_:622204 a rdf:Statement ;
up:attribution _:622185 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:622205 a rdf:Statement ;
up:attribution _:622186 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:622206 a rdf:Statement ;
up:attribution _:622187 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:622207 a rdf:Statement ;
up:attribution _:622188 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:622208 a rdf:Statement ;
up:attribution _:622189 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:622209 a rdf:Statement ;
up:attribution _:622190 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:622210 a rdf:Statement ;
up:attribution _:622191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:622211 a rdf:Statement ;
up:attribution _:622192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:622212 a rdf:Statement ;
up:attribution _:622193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:622213 a rdf:Statement ;
up:attribution _:622194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:622214 a rdf:Statement ;
up:attribution _:622195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:622215 a rdf:Statement ;
up:attribution _:622196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004497 .
_:622216 a rdf:Statement ;
up:attribution _:622197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006212 .
_:622217 a rdf:Statement ;
up:attribution _:622198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019740 .
_:622218 a rdf:Statement ;
up:source unirule:MF_01699 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:622219 a rdf:Statement ;
up:attribution _:622199 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:622220 a rdf:Statement ;
up:source unirule:MF_01699 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:622221 a rdf:Statement ;
up:attribution _:622200 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:622222 a rdf:Statement ;
up:source unirule:MF_01699 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:622223 a rdf:Statement ;
up:attribution _:622201 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:622224 a rdf:Statement ;
up:source unirule:MF_01699 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:622225 a rdf:Statement ;
up:attribution _:622202 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:622226 a rdf:Statement ;
up:source unirule:MF_01699 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:622227 a rdf:Statement ;
up:attribution _:622203 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01699
#Rule MF_01699 Created by:? on:2010-11-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01699 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01699a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP7589849 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589851 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75898MF_0169944 .
?templateMotifSequenceMatchRegionP7589849 faldo:begin ?templateMotifSequenceMatchBeginP7589850 .
?templateMotifSequenceMatchBeginP7589850 faldo:position ?templateMotifSequenceMatchBeginPositionP7589845 ;
faldo:reference isoform:P75898-1 .
?templateMotifSequenceProfileAlignmentOperationP7589851 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169955 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75898MF_0169946 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169954 .
?targetMotifMatchRegionMatchBeginMF_0169954 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169947 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169955 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169944, 1, (STRLEN(?templateMotifCigarP75898MF_0169944) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169944, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP7589845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169946, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169946) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169946, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169946, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169946) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169946, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0169947) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169944, 1, (STRLEN(?templateMotifCigarP75898MF_0169944) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169944, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP7589845) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169946, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169946) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169946, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169946, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169946) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169946, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0169947) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'IK')) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP7589866 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589868 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75898MF_0169961 .
?templateMotifSequenceMatchRegionP7589866 faldo:begin ?templateMotifSequenceMatchBeginP7589867 .
?templateMotifSequenceMatchBeginP7589867 faldo:position ?templateMotifSequenceMatchBeginPositionP7589862 ;
faldo:reference isoform:P75898-1 .
?templateMotifSequenceProfileAlignmentOperationP7589868 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169972 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75898MF_0169963 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169971 .
?targetMotifMatchRegionMatchBeginMF_0169971 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169964 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169972 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169961, 1, (STRLEN(?templateMotifCigarP75898MF_0169961) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169961, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP7589862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169963, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169963) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169963, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169963, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169963) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169963, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0169964) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169961, 1, (STRLEN(?templateMotifCigarP75898MF_0169961) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169961, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP7589862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169963, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169963) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169963, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169963, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169963) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169963, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0169964) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'RY')) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP7589883 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589885 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75898MF_0169978 .
?templateMotifSequenceMatchRegionP7589883 faldo:begin ?templateMotifSequenceMatchBeginP7589884 .
?templateMotifSequenceMatchBeginP7589884 faldo:position ?templateMotifSequenceMatchBeginPositionP7589879 ;
faldo:reference isoform:P75898-1 .
?templateMotifSequenceProfileAlignmentOperationP7589885 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169989 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75898MF_0169980 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169988 .
?targetMotifMatchRegionMatchBeginMF_0169988 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169981 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169989 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169978, 1, (STRLEN(?templateMotifCigarP75898MF_0169978) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169978, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP7589879) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169980, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169980) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169980, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169980) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169980, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0169981) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP7589898 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75898100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75898MF_0169993 .
?templateMotifSequenceMatchRegionP7589898 faldo:begin ?templateMotifSequenceMatchBeginP7589899 .
?templateMotifSequenceMatchBeginP7589899 faldo:position ?templateMotifSequenceMatchBeginPositionP7589894 ;
faldo:reference isoform:P75898-1 .
?templateMotifSequenceProfileAlignmentOperationP75898100 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01699104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75898MF_0169995 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01699103 .
?targetMotifMatchRegionMatchBeginMF_01699103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169996 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01699104 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_0169993, 1, (STRLEN(?templateMotifCigarP75898MF_0169993) - STRLEN(REPLACE(?templateMotifCigarP75898MF_0169993, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP7589894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_0169995, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169995) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_0169995, 1, (STRLEN(?targetMotifMatchCigarP75898MF_0169995) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_0169995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0169996) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP75898113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75898115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75898MF_01699108 .
?templateMotifSequenceMatchRegionP75898113 faldo:begin ?templateMotifSequenceMatchBeginP75898114 .
?templateMotifSequenceMatchBeginP75898114 faldo:position ?templateMotifSequenceMatchBeginPositionP75898109 ;
faldo:reference isoform:P75898-1 .
?templateMotifSequenceProfileAlignmentOperationP75898115 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01699119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75898MF_01699110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01699118 .
?targetMotifMatchRegionMatchBeginMF_01699118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01699111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01699119 edam:has_input signature:MF_01699 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75898MF_01699108, 1, (STRLEN(?templateMotifCigarP75898MF_01699108) - STRLEN(REPLACE(?templateMotifCigarP75898MF_01699108, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP75898109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75898MF_01699110, 1, (STRLEN(?targetMotifMatchCigarP75898MF_01699110) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_01699110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75898MF_01699110, 1, (STRLEN(?targetMotifMatchCigarP75898MF_01699110) - STRLEN(REPLACE(?targetMotifMatchCigarP75898MF_01699110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01699111) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01699a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon123 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon123 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
