| http://purl.uniprot.org/unirules/MF_01807#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:633395 up:source unirule:MF_01807 .
_:633396 up:source unirule:MF_01807 .
_:633397 up:source unirule:MF_01807 .
_:633398 up:source unirule:MF_01807 .
_:633399 up:source unirule:MF_01807 .
_:633400 up:source unirule:MF_01807 .
_:633401 up:source unirule:MF_01807 .
_:633402 up:source unirule:MF_01807 .
_:633403 up:source unirule:MF_01807 .
_:633404 up:source unirule:MF_01807 .
_:633405 up:source unirule:MF_01807 .
_:633406 up:source unirule:MF_01807 .
_:633407 up:source unirule:MF_01807 .
_:633408 up:source unirule:MF_01807 .
_:633409 up:source unirule:MF_01807 .
_:633410 up:source unirule:MF_01807 .
_:633411 up:source unirule:MF_01807 .
_:633412 up:source unirule:MF_01807 .
_:633413 up:source unirule:MF_01807 .
_:633414 up:source unirule:MF_01807 .
_:633415 up:source unirule:MF_01807 .
_:633416 up:source unirule:MF_01807 .
?this up:annotation ?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005737 ,
GO:0006310 ,
GO:0006313 ,
GO:0007059 ,
GO:0009037 ,
keyword:131 ,
keyword:132 ,
keyword:159 ,
keyword:229 ,
keyword:233 ,
keyword:238 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Tyrosine recombinase XerD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'xerD' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the 'phage' integrase family. XerD subfamily." .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(3'-phospho-DNA)-tyrosine intermediate" .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
_:633417 a rdf:Statement ;
up:attribution _:633395 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:633418 a rdf:Statement ;
up:attribution _:633396 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:633419 a rdf:Statement ;
up:attribution _:633397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:633420 a rdf:Statement ;
up:attribution _:633398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:633421 a rdf:Statement ;
up:attribution _:633399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:633422 a rdf:Statement ;
up:attribution _:633400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:633423 a rdf:Statement ;
up:attribution _:633401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:159 .
_:633424 a rdf:Statement ;
up:attribution _:633402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:633425 a rdf:Statement ;
up:attribution _:633403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:229 .
_:633426 a rdf:Statement ;
up:attribution _:633404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:233 .
_:633427 a rdf:Statement ;
up:attribution _:633405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:633428 a rdf:Statement ;
up:attribution _:633406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009037 .
_:633429 a rdf:Statement ;
up:attribution _:633407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:633430 a rdf:Statement ;
up:attribution _:633408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006310 .
_:633431 a rdf:Statement ;
up:attribution _:633409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006313 .
_:633432 a rdf:Statement ;
up:attribution _:633410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:633433 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:633434 a rdf:Statement ;
up:attribution _:633411 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:633435 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:633436 a rdf:Statement ;
up:attribution _:633412 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:633437 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:633438 a rdf:Statement ;
up:attribution _:633413 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:633439 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:633440 a rdf:Statement ;
up:attribution _:633414 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:633441 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:633442 a rdf:Statement ;
up:attribution _:633415 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:633443 a rdf:Statement ;
up:source unirule:MF_01807 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:633444 a rdf:Statement ;
up:attribution _:633416 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01807
#Rule MF_01807 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01807 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01807a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionP0A8P848 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P850 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_0180743 .
?templateMotifSequenceMatchRegionP0A8P848 faldo:begin ?templateMotifSequenceMatchBeginP0A8P849 .
?templateMotifSequenceMatchBeginP0A8P849 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P844 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P850 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180754 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_0180745 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180753 .
?targetMotifMatchRegionMatchBeginMF_0180753 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180746 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180754 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_0180743, 1, (STRLEN(?templateMotifCigarP0A8P8MF_0180743) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_0180743, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP0A8P844) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180745, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180745) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180745, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180745) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180745, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0180746) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP0A8P863 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P865 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_0180758 .
?templateMotifSequenceMatchRegionP0A8P863 faldo:begin ?templateMotifSequenceMatchBeginP0A8P864 .
?templateMotifSequenceMatchBeginP0A8P864 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P859 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P865 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_0180760 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180768 .
?targetMotifMatchRegionMatchBeginMF_0180768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180769 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_0180758, 1, (STRLEN(?templateMotifCigarP0A8P8MF_0180758) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_0180758, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP0A8P859) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180760, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180760) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180760, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180760) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0180761) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP0A8P878 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P880 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_0180773 .
?templateMotifSequenceMatchRegionP0A8P878 faldo:begin ?templateMotifSequenceMatchBeginP0A8P879 .
?templateMotifSequenceMatchBeginP0A8P879 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P874 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P880 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180784 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_0180775 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180783 .
?targetMotifMatchRegionMatchBeginMF_0180783 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180776 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180784 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_0180773, 1, (STRLEN(?templateMotifCigarP0A8P8MF_0180773) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_0180773, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP0A8P874) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180775, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180775) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180775, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180775) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0180776) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP0A8P893 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P895 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_0180788 .
?templateMotifSequenceMatchRegionP0A8P893 faldo:begin ?templateMotifSequenceMatchBeginP0A8P894 .
?templateMotifSequenceMatchBeginP0A8P894 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P889 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P895 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180799 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_0180790 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180798 .
?targetMotifMatchRegionMatchBeginMF_0180798 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180791 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180799 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_0180788, 1, (STRLEN(?templateMotifCigarP0A8P8MF_0180788) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_0180788, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0A8P889) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180790, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180790) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_0180790, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_0180790) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_0180790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0180791) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP0A8P8108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P8110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_01807103 .
?templateMotifSequenceMatchRegionP0A8P8108 faldo:begin ?templateMotifSequenceMatchBeginP0A8P8109 .
?templateMotifSequenceMatchBeginP0A8P8109 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P8104 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P8110 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01807114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_01807105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01807113 .
?targetMotifMatchRegionMatchBeginMF_01807113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01807106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01807114 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_01807103, 1, (STRLEN(?templateMotifCigarP0A8P8MF_01807103) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_01807103, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP0A8P8104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_01807105, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_01807105) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_01807105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_01807105, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_01807105) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_01807105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01807106) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP0A8P8123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8P8125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8P8MF_01807118 .
?templateMotifSequenceMatchRegionP0A8P8123 faldo:begin ?templateMotifSequenceMatchBeginP0A8P8124 .
?templateMotifSequenceMatchBeginP0A8P8124 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8P8119 ;
faldo:reference isoform:P0A8P8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8P8125 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01807129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8P8MF_01807120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01807128 .
?targetMotifMatchRegionMatchBeginMF_01807128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01807121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01807129 edam:has_input signature:MF_01807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8P8MF_01807118, 1, (STRLEN(?templateMotifCigarP0A8P8MF_01807118) - STRLEN(REPLACE(?templateMotifCigarP0A8P8MF_01807118, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP0A8P8119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8P8MF_01807120, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_01807120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_01807120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8P8MF_01807120, 1, (STRLEN(?targetMotifMatchCigarP0A8P8MF_01807120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8P8MF_01807120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01807121) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01807a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case6) .
}
}
"xsd:string |
