| http://purl.uniprot.org/unirules/MF_01816#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:636772 up:source unirule:MF_01816 .
_:636773 up:source unirule:MF_01816 .
_:636774 up:source unirule:MF_01816 .
_:636775 up:source unirule:MF_01816 .
_:636776 up:source unirule:MF_01816 .
_:636777 up:source unirule:MF_01816 .
_:636778 up:source unirule:MF_01816 .
_:636779 up:source unirule:MF_01816 .
_:636780 up:source unirule:MF_01816 .
_:636781 up:source unirule:MF_01816 .
_:636782 up:source unirule:MF_01816 .
_:636783 up:source unirule:MF_01816 .
_:636784 up:source unirule:MF_01816 .
_:636785 up:source unirule:MF_01816 .
_:636786 up:source unirule:MF_01816 .
_:636787 up:source unirule:MF_01816 .
_:636788 up:source unirule:MF_01816 .
_:636789 up:source unirule:MF_01816 .
_:636790 up:source unirule:MF_01816 .
_:636791 up:source unirule:MF_01816 .
_:636792 up:source unirule:MF_01816 .
_:636793 up:source unirule:MF_01816 .
_:636794 up:source unirule:MF_01816 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006310 ,
GO:0007059 ,
GO:0009037 ,
keyword:131 ,
keyword:132 ,
keyword:159 ,
keyword:229 ,
keyword:233 ,
keyword:238 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Tyrosine recombinase XerS' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'xerS' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division.' .
?annotation3 a up:Activity_Regulation_Annotation ;
rdfs:comment 'FtsK is required for recombination.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the 'phage' integrase family. XerS subfamily." .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(3'-phospho-DNA)-tyrosine intermediate" .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
_:636795 a rdf:Statement ;
up:attribution _:636772 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:636796 a rdf:Statement ;
up:attribution _:636773 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:636797 a rdf:Statement ;
up:attribution _:636774 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:636798 a rdf:Statement ;
up:attribution _:636775 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:636799 a rdf:Statement ;
up:attribution _:636776 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:636800 a rdf:Statement ;
up:attribution _:636777 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:636801 a rdf:Statement ;
up:attribution _:636778 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:636802 a rdf:Statement ;
up:attribution _:636779 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:636803 a rdf:Statement ;
up:attribution _:636780 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:159 .
_:636804 a rdf:Statement ;
up:attribution _:636781 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:636805 a rdf:Statement ;
up:attribution _:636782 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:229 .
_:636806 a rdf:Statement ;
up:attribution _:636783 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:233 .
_:636807 a rdf:Statement ;
up:attribution _:636784 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:636808 a rdf:Statement ;
up:attribution _:636785 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009037 .
_:636809 a rdf:Statement ;
up:attribution _:636786 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:636810 a rdf:Statement ;
up:attribution _:636787 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006310 .
_:636811 a rdf:Statement ;
up:attribution _:636788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:636812 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:636813 a rdf:Statement ;
up:attribution _:636789 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:636814 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:636815 a rdf:Statement ;
up:attribution _:636790 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:636816 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:636817 a rdf:Statement ;
up:attribution _:636791 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:636818 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:636819 a rdf:Statement ;
up:attribution _:636792 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:636820 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:636821 a rdf:Statement ;
up:attribution _:636793 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:636822 a rdf:Statement ;
up:source unirule:MF_01816 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:636823 a rdf:Statement ;
up:attribution _:636794 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01816
#Rule MF_01816 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01816 .
?thisOrganism rdfs:subClassOf+ taxon:1300 .
BIND(URI(CONCAT(STR(?this), '#MF_01816a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionA2RKP948 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP950 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_0181643 .
?templateMotifSequenceMatchRegionA2RKP948 faldo:begin ?templateMotifSequenceMatchBeginA2RKP949 .
?templateMotifSequenceMatchBeginA2RKP949 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP944 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP950 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0181654 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_0181645 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0181653 .
?targetMotifMatchRegionMatchBeginMF_0181653 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0181646 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0181654 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_0181643, 1, (STRLEN(?templateMotifCigarA2RKP9MF_0181643) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_0181643, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionA2RKP944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181645, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181645) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181645, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181645) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0181646) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionA2RKP963 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP965 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_0181658 .
?templateMotifSequenceMatchRegionA2RKP963 faldo:begin ?templateMotifSequenceMatchBeginA2RKP964 .
?templateMotifSequenceMatchBeginA2RKP964 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP959 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP965 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0181669 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_0181660 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0181668 .
?targetMotifMatchRegionMatchBeginMF_0181668 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0181661 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0181669 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_0181658, 1, (STRLEN(?templateMotifCigarA2RKP9MF_0181658) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_0181658, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionA2RKP959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181660, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181660) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181660, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181660) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0181661) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionA2RKP978 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP980 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_0181673 .
?templateMotifSequenceMatchRegionA2RKP978 faldo:begin ?templateMotifSequenceMatchBeginA2RKP979 .
?templateMotifSequenceMatchBeginA2RKP979 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP974 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP980 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0181684 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_0181675 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0181683 .
?targetMotifMatchRegionMatchBeginMF_0181683 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0181676 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0181684 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_0181673, 1, (STRLEN(?templateMotifCigarA2RKP9MF_0181673) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_0181673, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionA2RKP974) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181675, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181675) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181675, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181675) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0181676) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionA2RKP993 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP995 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_0181688 .
?templateMotifSequenceMatchRegionA2RKP993 faldo:begin ?templateMotifSequenceMatchBeginA2RKP994 .
?templateMotifSequenceMatchBeginA2RKP994 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP989 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP995 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0181699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_0181690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0181698 .
?targetMotifMatchRegionMatchBeginMF_0181698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0181691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0181699 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_0181688, 1, (STRLEN(?templateMotifCigarA2RKP9MF_0181688) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_0181688, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionA2RKP989) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181690, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181690) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_0181690, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_0181690) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_0181690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0181691) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionA2RKP9108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP9110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_01816103 .
?templateMotifSequenceMatchRegionA2RKP9108 faldo:begin ?templateMotifSequenceMatchBeginA2RKP9109 .
?templateMotifSequenceMatchBeginA2RKP9109 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP9104 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP9110 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01816114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_01816105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01816113 .
?targetMotifMatchRegionMatchBeginMF_01816113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01816106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01816114 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_01816103, 1, (STRLEN(?templateMotifCigarA2RKP9MF_01816103) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_01816103, CONCAT('^(?:-*[^-]){', STR(((332 - ?templateMotifSequenceMatchBeginPositionA2RKP9104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_01816105, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_01816105) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_01816105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_01816105, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_01816105) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_01816105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01816106) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionA2RKP9123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2RKP9125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2RKP9MF_01816118 .
?templateMotifSequenceMatchRegionA2RKP9123 faldo:begin ?templateMotifSequenceMatchBeginA2RKP9124 .
?templateMotifSequenceMatchBeginA2RKP9124 faldo:position ?templateMotifSequenceMatchBeginPositionA2RKP9119 ;
faldo:reference isoform:A2RKP9-1 .
?templateMotifSequenceProfileAlignmentOperationA2RKP9125 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01816129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2RKP9MF_01816120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01816128 .
?targetMotifMatchRegionMatchBeginMF_01816128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01816121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01816129 edam:has_input signature:MF_01816 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2RKP9MF_01816118, 1, (STRLEN(?templateMotifCigarA2RKP9MF_01816118) - STRLEN(REPLACE(?templateMotifCigarA2RKP9MF_01816118, CONCAT('^(?:-*[^-]){', STR(((341 - ?templateMotifSequenceMatchBeginPositionA2RKP9119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2RKP9MF_01816120, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_01816120) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_01816120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2RKP9MF_01816120, 1, (STRLEN(?targetMotifMatchCigarA2RKP9MF_01816120) - STRLEN(REPLACE(?targetMotifMatchCigarA2RKP9MF_01816120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01816121) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01816a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
}
"xsd:string |
