| http://purl.uniprot.org/unirules/MF_01824#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:639064 up:source unirule:MF_01824 .
_:639065 up:source unirule:MF_01824 .
_:639066 up:source unirule:MF_01824 .
_:639067 up:source unirule:MF_01824 .
_:639068 up:source unirule:MF_01824 .
_:639069 up:source unirule:MF_01824 .
_:639070 up:source unirule:MF_01824 .
_:639071 up:source unirule:MF_01824 .
_:639072 up:source unirule:MF_01824 .
_:639073 up:source unirule:MF_01824 .
_:639074 up:source unirule:MF_01824 .
_:639075 up:source unirule:MF_01824 .
_:639076 up:source unirule:MF_01824 .
_:639077 up:source unirule:MF_01824 .
_:639078 up:source unirule:MF_01824 .
_:639079 up:source unirule:MF_01824 .
_:639080 up:source unirule:MF_01824 .
_:639081 up:source unirule:MF_01824 .
_:639082 up:source unirule:MF_01824 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0036381 ,
GO:0042823 ,
keyword:456 ,
keyword:663 ,
keyword:704 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.3.3.6' ;
up:fullName "Pyridoxal 5'-phosphate synthase subunit PdxS" ;
up:shortName 'PLP synthase subunit PdxS' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Pdx1' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pdxS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment "Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis." .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'In the presence of PdxT, forms a dodecamer of heterodimers.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PdxS/SNZ family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:78346 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with D-ribose 5-phosphate' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:78346 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:78346 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:59776 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:78346 .
_:639083 a rdf:Statement ;
up:attribution _:639064 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:639084 a rdf:Statement ;
up:attribution _:639065 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:639085 a rdf:Statement ;
up:attribution _:639066 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:639086 a rdf:Statement ;
up:attribution _:639067 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:639087 a rdf:Statement ;
up:attribution _:639068 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:639088 a rdf:Statement ;
up:attribution _:639069 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:639089 a rdf:Statement ;
up:attribution _:639070 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:639090 a rdf:Statement ;
up:attribution _:639071 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:639091 a rdf:Statement ;
up:attribution _:639072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:639092 a rdf:Statement ;
up:attribution _:639073 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:639093 a rdf:Statement ;
up:attribution _:639074 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:639094 a rdf:Statement ;
up:attribution _:639075 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036381 .
_:639095 a rdf:Statement ;
up:attribution _:639076 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042823 .
_:639096 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:639097 a rdf:Statement ;
up:attribution _:639077 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:639098 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:639099 a rdf:Statement ;
up:attribution _:639078 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:639100 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:639101 a rdf:Statement ;
up:attribution _:639079 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:639102 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:639103 a rdf:Statement ;
up:attribution _:639080 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:639104 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:639105 a rdf:Statement ;
up:attribution _:639081 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:639106 a rdf:Statement ;
up:source unirule:MF_01824 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:639107 a rdf:Statement ;
up:attribution _:639082 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01824
#Rule MF_01824 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon50 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01824 .
?thisOrganism rdfs:subClassOf+ ?supertaxon50 .
BIND(URI(CONCAT(STR(?this), '#MF_01824a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionO5908056 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5908058 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_0182451 .
?templateMotifSequenceMatchRegionO5908056 faldo:begin ?templateMotifSequenceMatchBeginO5908057 .
?templateMotifSequenceMatchBeginO5908057 faldo:position ?templateMotifSequenceMatchBeginPositionO5908052 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO5908058 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182462 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_0182453 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182461 .
?targetMotifMatchRegionMatchBeginMF_0182461 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182454 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0182462 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_0182451, 1, (STRLEN(?templateMotifCigarO59080MF_0182451) - STRLEN(REPLACE(?templateMotifCigarO59080MF_0182451, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionO5908052) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_0182453, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182453) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_0182453, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182453) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0182454) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_0182451, 1, (STRLEN(?templateMotifCigarO59080MF_0182451) - STRLEN(REPLACE(?templateMotifCigarO59080MF_0182451, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionO5908052) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_0182453, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182453) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_0182453, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182453) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0182454) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'GS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionO5908073 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5908075 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_0182468 .
?templateMotifSequenceMatchRegionO5908073 faldo:begin ?templateMotifSequenceMatchBeginO5908074 .
?templateMotifSequenceMatchBeginO5908074 faldo:position ?templateMotifSequenceMatchBeginPositionO5908069 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO5908075 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_0182470 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182478 .
?targetMotifMatchRegionMatchBeginMF_0182478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0182479 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_0182468, 1, (STRLEN(?templateMotifCigarO59080MF_0182468) - STRLEN(REPLACE(?templateMotifCigarO59080MF_0182468, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionO5908069) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_0182470, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182470) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_0182470, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182470) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0182471) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionO5908088 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5908090 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_0182483 .
?templateMotifSequenceMatchRegionO5908088 faldo:begin ?templateMotifSequenceMatchBeginO5908089 .
?templateMotifSequenceMatchBeginO5908089 faldo:position ?templateMotifSequenceMatchBeginPositionO5908084 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO5908090 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0182494 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_0182485 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0182493 .
?targetMotifMatchRegionMatchBeginMF_0182493 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182486 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0182494 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_0182483, 1, (STRLEN(?templateMotifCigarO59080MF_0182483) - STRLEN(REPLACE(?templateMotifCigarO59080MF_0182483, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionO5908084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_0182485, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182485) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_0182485, 1, (STRLEN(?targetMotifMatchCigarO59080MF_0182485) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_0182485, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0182486) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionO59080103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59080105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_0182498 .
?templateMotifSequenceMatchRegionO59080103 faldo:begin ?templateMotifSequenceMatchBeginO59080104 .
?templateMotifSequenceMatchBeginO59080104 faldo:position ?templateMotifSequenceMatchBeginPositionO5908099 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO59080105 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01824109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_01824100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01824108 .
?targetMotifMatchRegionMatchBeginMF_01824108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01824101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01824109 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_0182498, 1, (STRLEN(?templateMotifCigarO59080MF_0182498) - STRLEN(REPLACE(?templateMotifCigarO59080MF_0182498, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionO5908099) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_01824100, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824100) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_01824100, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824100) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01824101) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionO59080118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59080120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_01824113 .
?templateMotifSequenceMatchRegionO59080118 faldo:begin ?templateMotifSequenceMatchBeginO59080119 .
?templateMotifSequenceMatchBeginO59080119 faldo:position ?templateMotifSequenceMatchBeginPositionO59080114 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO59080120 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01824124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_01824115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01824123 .
?targetMotifMatchRegionMatchBeginMF_01824123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01824116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01824124 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_01824113, 1, (STRLEN(?templateMotifCigarO59080MF_01824113) - STRLEN(REPLACE(?templateMotifCigarO59080MF_01824113, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionO59080114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_01824115, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824115) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_01824115, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824115) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01824116) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[RKQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionO59080133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59080135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59080MF_01824128 .
?templateMotifSequenceMatchRegionO59080133 faldo:begin ?templateMotifSequenceMatchBeginO59080134 .
?templateMotifSequenceMatchBeginO59080134 faldo:position ?templateMotifSequenceMatchBeginPositionO59080129 ;
faldo:reference isoform:O59080-1 .
?templateMotifSequenceProfileAlignmentOperationO59080135 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01824139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59080MF_01824130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01824138 .
?targetMotifMatchRegionMatchBeginMF_01824138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01824131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01824139 edam:has_input signature:MF_01824 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59080MF_01824128, 1, (STRLEN(?templateMotifCigarO59080MF_01824128) - STRLEN(REPLACE(?templateMotifCigarO59080MF_01824128, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionO59080129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59080MF_01824130, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824130) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59080MF_01824130, 1, (STRLEN(?targetMotifMatchCigarO59080MF_01824130) - STRLEN(REPLACE(?targetMotifMatchCigarO59080MF_01824130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01824131) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01824a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
}
"xsd:string |
