| http://purl.uniprot.org/unirules/MF_01856#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:650482 up:source unirule:MF_01856 .
_:650483 up:source unirule:MF_01856 .
_:650484 up:source unirule:MF_01856 .
_:650485 up:source unirule:MF_01856 .
_:650486 up:source unirule:MF_01856 .
_:650487 up:source unirule:MF_01856 .
_:650488 up:source unirule:MF_01856 .
_:650489 up:source unirule:MF_01856 .
_:650490 up:source unirule:MF_01856 .
_:650491 up:source unirule:MF_01856 .
_:650492 up:source unirule:MF_01856 .
_:650493 up:source unirule:MF_01856 .
_:650494 up:source unirule:MF_01856 .
_:650495 up:source unirule:MF_01856 .
_:650496 up:source unirule:MF_01856 .
_:650497 up:source unirule:MF_01856 .
_:650498 up:source unirule:MF_01856 .
_:650499 up:source unirule:MF_01856 .
_:650500 up:source unirule:MF_01856 .
_:650501 up:source unirule:MF_01856 .
_:650502 up:source unirule:MF_01856 .
_:650503 up:source unirule:MF_01856 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0016434 ,
GO:0031167 ,
keyword:489 ,
keyword:694 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.176' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase B' ;
rdf:type up:Structured_Name .
?name1 up:fullName '16S rRNA m5C967 methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'rRNA (cytosine-C(5)-)-methyltransferase RsmB' ;
rdf:type up:Structured_Name .
?gene3 skos:altLabel 'sun' ;
skos:prefLabel 'rsmB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:59789 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:59789 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:59789 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:59789 .
_:650504 a rdf:Statement ;
up:attribution _:650482 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:650505 a rdf:Statement ;
up:attribution _:650483 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:650506 a rdf:Statement ;
up:attribution _:650484 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:650507 a rdf:Statement ;
up:attribution _:650485 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:650508 a rdf:Statement ;
up:attribution _:650486 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:650509 a rdf:Statement ;
up:attribution _:650487 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:650510 a rdf:Statement ;
up:attribution _:650488 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:650511 a rdf:Statement ;
up:attribution _:650489 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:650512 a rdf:Statement ;
up:attribution _:650490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:650513 a rdf:Statement ;
up:attribution _:650491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:650514 a rdf:Statement ;
up:attribution _:650492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:650515 a rdf:Statement ;
up:attribution _:650493 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:650516 a rdf:Statement ;
up:attribution _:650494 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:650517 a rdf:Statement ;
up:attribution _:650495 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:650518 a rdf:Statement ;
up:attribution _:650496 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016434 .
_:650519 a rdf:Statement ;
up:attribution _:650497 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031167 .
_:650520 a rdf:Statement ;
up:attribution _:650498 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:650521 a rdf:Statement ;
up:source unirule:MF_01856 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:650522 a rdf:Statement ;
up:attribution _:650499 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:650523 a rdf:Statement ;
up:source unirule:MF_01856 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:650524 a rdf:Statement ;
up:attribution _:650500 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:650525 a rdf:Statement ;
up:source unirule:MF_01856 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:650526 a rdf:Statement ;
up:attribution _:650501 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:650527 a rdf:Statement ;
up:source unirule:MF_01856 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:650528 a rdf:Statement ;
up:attribution _:650502 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:650529 a rdf:Statement ;
up:source unirule:MF_01856 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:650530 a rdf:Statement ;
up:attribution _:650503 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01856
#Rule MF_01856 Created by:? on:2009-02-05 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01856 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01856a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP3692949 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3692951 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36929MF_0185644 .
?templateMotifSequenceMatchRegionP3692949 faldo:begin ?templateMotifSequenceMatchBeginP3692950 .
?templateMotifSequenceMatchBeginP3692950 faldo:position ?templateMotifSequenceMatchBeginPositionP3692945 ;
faldo:reference isoform:P36929-1 .
?templateMotifSequenceProfileAlignmentOperationP3692951 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0185655 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36929MF_0185646 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0185654 .
?targetMotifMatchRegionMatchBeginMF_0185654 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185647 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0185655 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_0185644, 1, (STRLEN(?templateMotifCigarP36929MF_0185644) - STRLEN(REPLACE(?templateMotifCigarP36929MF_0185644, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP3692945) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_0185646, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185646) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_0185646, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185646) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0185647) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_0185644, 1, (STRLEN(?templateMotifCigarP36929MF_0185644) - STRLEN(REPLACE(?templateMotifCigarP36929MF_0185644, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP3692945) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_0185646, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185646) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_0185646, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185646) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0185647) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('[ACSV][ACPS][AGP][PQ][AG][GINS]K', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP3692966 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3692968 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36929MF_0185661 .
?templateMotifSequenceMatchRegionP3692966 faldo:begin ?templateMotifSequenceMatchBeginP3692967 .
?templateMotifSequenceMatchBeginP3692967 faldo:position ?templateMotifSequenceMatchBeginPositionP3692962 ;
faldo:reference isoform:P36929-1 .
?templateMotifSequenceProfileAlignmentOperationP3692968 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0185672 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36929MF_0185663 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0185671 .
?targetMotifMatchRegionMatchBeginMF_0185671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185664 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0185672 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_0185661, 1, (STRLEN(?templateMotifCigarP36929MF_0185661) - STRLEN(REPLACE(?templateMotifCigarP36929MF_0185661, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP3692962) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_0185663, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185663) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_0185663, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185663) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0185664) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP3692981 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3692983 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36929MF_0185676 .
?templateMotifSequenceMatchRegionP3692981 faldo:begin ?templateMotifSequenceMatchBeginP3692982 .
?templateMotifSequenceMatchBeginP3692982 faldo:position ?templateMotifSequenceMatchBeginPositionP3692977 ;
faldo:reference isoform:P36929-1 .
?templateMotifSequenceProfileAlignmentOperationP3692983 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0185687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36929MF_0185678 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0185686 .
?targetMotifMatchRegionMatchBeginMF_0185686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0185687 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_0185676, 1, (STRLEN(?templateMotifCigarP36929MF_0185676) - STRLEN(REPLACE(?templateMotifCigarP36929MF_0185676, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP3692977) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_0185678, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185678) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_0185678, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185678) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0185679) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP3692996 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3692998 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36929MF_0185691 .
?templateMotifSequenceMatchRegionP3692996 faldo:begin ?templateMotifSequenceMatchBeginP3692997 .
?templateMotifSequenceMatchBeginP3692997 faldo:position ?templateMotifSequenceMatchBeginPositionP3692992 ;
faldo:reference isoform:P36929-1 .
?templateMotifSequenceProfileAlignmentOperationP3692998 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01856102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36929MF_0185693 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01856101 .
?targetMotifMatchRegionMatchBeginMF_01856101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185694 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01856102 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_0185691, 1, (STRLEN(?templateMotifCigarP36929MF_0185691) - STRLEN(REPLACE(?templateMotifCigarP36929MF_0185691, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionP3692992) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_0185693, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185693) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_0185693, 1, (STRLEN(?targetMotifMatchCigarP36929MF_0185693) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_0185693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0185694) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP36929111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36929113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36929MF_01856106 .
?templateMotifSequenceMatchRegionP36929111 faldo:begin ?templateMotifSequenceMatchBeginP36929112 .
?templateMotifSequenceMatchBeginP36929112 faldo:position ?templateMotifSequenceMatchBeginPositionP36929107 ;
faldo:reference isoform:P36929-1 .
?templateMotifSequenceProfileAlignmentOperationP36929113 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01856117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36929MF_01856108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01856116 .
?targetMotifMatchRegionMatchBeginMF_01856116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01856109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01856117 edam:has_input signature:MF_01856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36929MF_01856106, 1, (STRLEN(?templateMotifCigarP36929MF_01856106) - STRLEN(REPLACE(?templateMotifCigarP36929MF_01856106, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionP36929107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36929MF_01856108, 1, (STRLEN(?targetMotifMatchCigarP36929MF_01856108) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_01856108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36929MF_01856108, 1, (STRLEN(?targetMotifMatchCigarP36929MF_01856108) - STRLEN(REPLACE(?targetMotifMatchCigarP36929MF_01856108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01856109) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01856a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
}
"xsd:string |
