| http://purl.uniprot.org/unirules/MF_01876#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:656309 up:source unirule:MF_01876 .
_:656310 up:source unirule:MF_01876 .
_:656311 up:source unirule:MF_01876 .
_:656312 up:source unirule:MF_01876 .
_:656313 up:source unirule:MF_01876 .
_:656314 up:source unirule:MF_01876 .
_:656315 up:source unirule:MF_01876 .
_:656316 up:source unirule:MF_01876 .
_:656317 up:source unirule:MF_01876 .
_:656318 up:source unirule:MF_01876 .
_:656319 up:source unirule:MF_01876 .
_:656320 up:source unirule:MF_01876 .
_:656321 up:source unirule:MF_01876 .
_:656322 up:source unirule:MF_01876 .
_:656323 up:source unirule:MF_01876 .
_:656324 up:source unirule:MF_01876 .
_:656325 up:source unirule:MF_01876 .
_:656326 up:source unirule:MF_01876 .
_:656327 up:source unirule:MF_01876 .
_:656328 up:source unirule:MF_01876 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004730 ,
GO:0046113 ,
keyword:326 ,
keyword:378 ,
keyword:456 ,
keyword:464 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.70' ;
up:fullName "Pseudouridine-5'-phosphate glycosidase" ;
up:shortName 'PsiMP glycosidase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'psuG' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Catalyzes the reversible cleavage of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mn(2+) ion per subunit.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the pseudouridine-5'-phosphate glycosidase family." .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29035 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf ?molecule48 .
?molecule48 rdfs:label 'substrate' .
_:656329 a rdf:Statement ;
up:attribution _:656309 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:656330 a rdf:Statement ;
up:attribution _:656310 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:656331 a rdf:Statement ;
up:attribution _:656311 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:656332 a rdf:Statement ;
up:attribution _:656312 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:656333 a rdf:Statement ;
up:attribution _:656313 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:656334 a rdf:Statement ;
up:attribution _:656314 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:656335 a rdf:Statement ;
up:attribution _:656315 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:656336 a rdf:Statement ;
up:attribution _:656316 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:656337 a rdf:Statement ;
up:attribution _:656317 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:656338 a rdf:Statement ;
up:attribution _:656318 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:656339 a rdf:Statement ;
up:attribution _:656319 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:656340 a rdf:Statement ;
up:attribution _:656320 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:656341 a rdf:Statement ;
up:attribution _:656321 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004730 .
_:656342 a rdf:Statement ;
up:attribution _:656322 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046113 .
_:656343 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:656344 a rdf:Statement ;
up:attribution _:656323 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:656345 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:656346 a rdf:Statement ;
up:attribution _:656324 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:656347 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:656348 a rdf:Statement ;
up:attribution _:656325 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:656349 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:656350 a rdf:Statement ;
up:attribution _:656326 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:656351 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:656352 a rdf:Statement ;
up:attribution _:656327 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:656353 a rdf:Statement ;
up:source unirule:MF_01876 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:656354 a rdf:Statement ;
up:attribution _:656328 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01876
#Rule MF_01876 Created by:? on:2009-11-25 Modified by:Elisabeth Coudert on:2024-09-09
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01876 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01876a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP3302556 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3302558 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_0187651 .
?templateMotifSequenceMatchRegionP3302556 faldo:begin ?templateMotifSequenceMatchBeginP3302557 .
?templateMotifSequenceMatchBeginP3302557 faldo:position ?templateMotifSequenceMatchBeginPositionP3302552 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP3302558 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187662 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_0187653 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187661 .
?targetMotifMatchRegionMatchBeginMF_0187661 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187654 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0187662 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_0187651, 1, (STRLEN(?templateMotifCigarP33025MF_0187651) - STRLEN(REPLACE(?templateMotifCigarP33025MF_0187651, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP3302552) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_0187653, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187653) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187653, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_0187653, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187653) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187653, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0187654) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_0187651, 1, (STRLEN(?templateMotifCigarP33025MF_0187651) - STRLEN(REPLACE(?templateMotifCigarP33025MF_0187651, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP3302552) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_0187653, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187653) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187653, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_0187653, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187653) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187653, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0187654) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP3302573 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3302575 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_0187668 .
?templateMotifSequenceMatchRegionP3302573 faldo:begin ?templateMotifSequenceMatchBeginP3302574 .
?templateMotifSequenceMatchBeginP3302574 faldo:position ?templateMotifSequenceMatchBeginPositionP3302569 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP3302575 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187679 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_0187670 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187678 .
?targetMotifMatchRegionMatchBeginMF_0187678 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187671 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0187679 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_0187668, 1, (STRLEN(?templateMotifCigarP33025MF_0187668) - STRLEN(REPLACE(?templateMotifCigarP33025MF_0187668, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP3302569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_0187670, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187670) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187670, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_0187670, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187670) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187670, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0187671) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP3302588 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3302590 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_0187683 .
?templateMotifSequenceMatchRegionP3302588 faldo:begin ?templateMotifSequenceMatchBeginP3302589 .
?templateMotifSequenceMatchBeginP3302589 faldo:position ?templateMotifSequenceMatchBeginPositionP3302584 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP3302590 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187694 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_0187685 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187693 .
?targetMotifMatchRegionMatchBeginMF_0187693 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187686 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0187694 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_0187683, 1, (STRLEN(?templateMotifCigarP33025MF_0187683) - STRLEN(REPLACE(?templateMotifCigarP33025MF_0187683, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP3302584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_0187685, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187685) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_0187685, 1, (STRLEN(?targetMotifMatchCigarP33025MF_0187685) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_0187685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0187686) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP33025103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33025105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_0187698 .
?templateMotifSequenceMatchRegionP33025103 faldo:begin ?templateMotifSequenceMatchBeginP33025104 .
?templateMotifSequenceMatchBeginP33025104 faldo:position ?templateMotifSequenceMatchBeginPositionP3302599 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP33025105 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01876109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_01876100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01876108 .
?targetMotifMatchRegionMatchBeginMF_01876108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01876101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01876109 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_0187698, 1, (STRLEN(?templateMotifCigarP33025MF_0187698) - STRLEN(REPLACE(?templateMotifCigarP33025MF_0187698, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP3302599) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_01876100, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876100) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_01876100, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876100) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01876101) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP33025118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33025120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_01876113 .
?templateMotifSequenceMatchRegionP33025118 faldo:begin ?templateMotifSequenceMatchBeginP33025119 .
?templateMotifSequenceMatchBeginP33025119 faldo:position ?templateMotifSequenceMatchBeginPositionP33025114 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP33025120 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01876124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_01876115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01876123 .
?targetMotifMatchRegionMatchBeginMF_01876123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01876116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01876124 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_01876113, 1, (STRLEN(?templateMotifCigarP33025MF_01876113) - STRLEN(REPLACE(?templateMotifCigarP33025MF_01876113, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP33025114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_01876115, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876115) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_01876115, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876115) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01876116) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP33025133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33025135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33025MF_01876128 .
?templateMotifSequenceMatchRegionP33025133 faldo:begin ?templateMotifSequenceMatchBeginP33025134 .
?templateMotifSequenceMatchBeginP33025134 faldo:position ?templateMotifSequenceMatchBeginPositionP33025129 ;
faldo:reference isoform:P33025-1 .
?templateMotifSequenceProfileAlignmentOperationP33025135 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01876139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33025MF_01876130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01876138 .
?targetMotifMatchRegionMatchBeginMF_01876138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01876131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01876139 edam:has_input signature:MF_01876 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33025MF_01876128, 1, (STRLEN(?templateMotifCigarP33025MF_01876128) - STRLEN(REPLACE(?templateMotifCigarP33025MF_01876128, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP33025129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33025MF_01876130, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876130) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33025MF_01876130, 1, (STRLEN(?targetMotifMatchCigarP33025MF_01876130) - STRLEN(REPLACE(?targetMotifMatchCigarP33025MF_01876130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01876131) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse46) .
FILTER (REGEX('[VA]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01876a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
}
"xsd:string |
