| http://purl.uniprot.org/unirules/MF_01913#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:668465 up:source unirule:MF_01913 .
_:668466 up:source unirule:MF_01913 .
_:668467 up:source unirule:MF_01913 .
_:668468 up:source unirule:MF_01913 .
_:668469 up:source unirule:MF_01913 .
_:668470 up:source unirule:MF_01913 .
_:668471 up:source unirule:MF_01913 .
_:668472 up:source unirule:MF_01913 .
_:668473 up:source unirule:MF_01913 .
_:668474 up:source unirule:MF_01913 .
_:668475 up:source unirule:MF_01913 .
_:668476 up:source unirule:MF_01913 .
_:668477 up:source unirule:MF_01913 .
_:668478 up:source unirule:MF_01913 .
_:668479 up:source unirule:MF_01913 .
_:668480 up:source unirule:MF_01913 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0061596 ,
GO:1902777 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.373' ;
up:fullName '3-sulfolactaldehyde reductase' ;
up:shortName 'SLA reductase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Reduces 3-sulfolactaldehyde (SLA) to 2,3-dihydroxypropane 1-sulfonate (DHPS).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HIBADH-related family. 3-sulfolactaldehyde reductase subfamily.' .
?pfs5 up:annotation ?annotation6 .
?annotation6 faldo:begin ?pfsb7 ;
faldo:end ?pfse8 ;
up:ligand ?ligand9 ;
rdf:type up:Binding_Site_Annotation .
?pfsb7 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?ligand9 rdfs:subClassOf chebi:57540 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:77138 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:57540 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:57540 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:57540 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:77138 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:57540 .
_:668481 a rdf:Statement ;
up:attribution _:668465 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:668482 a rdf:Statement ;
up:attribution _:668466 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:668483 a rdf:Statement ;
up:attribution _:668467 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:668484 a rdf:Statement ;
up:attribution _:668468 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:668485 a rdf:Statement ;
up:attribution _:668469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:668486 a rdf:Statement ;
up:attribution _:668470 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:668487 a rdf:Statement ;
up:attribution _:668471 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061596 .
_:668488 a rdf:Statement ;
up:attribution _:668472 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1902777 .
_:668489 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:668490 a rdf:Statement ;
up:attribution _:668473 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:668491 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:668492 a rdf:Statement ;
up:attribution _:668474 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:668493 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:668494 a rdf:Statement ;
up:attribution _:668475 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:668495 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:668496 a rdf:Statement ;
up:attribution _:668476 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:668497 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:668498 a rdf:Statement ;
up:attribution _:668477 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:668499 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:668500 a rdf:Statement ;
up:attribution _:668478 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:668501 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:668502 a rdf:Statement ;
up:attribution _:668479 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:668503 a rdf:Statement ;
up:source unirule:MF_01913 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:668504 a rdf:Statement ;
up:attribution _:668480 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01913
#Rule MF_01913 Created by:? on:2014-03-31 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01913 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01913a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP0A9V865 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V867 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_0191360 .
?templateMotifSequenceMatchRegionP0A9V865 faldo:begin ?templateMotifSequenceMatchBeginP0A9V866 .
?templateMotifSequenceMatchBeginP0A9V866 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V861 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V867 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191371 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_0191362 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191370 .
?targetMotifMatchRegionMatchBeginMF_0191370 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191363 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191371 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_0191360, 1, (STRLEN(?templateMotifCigarP0A9V8MF_0191360) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_0191360, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP0A9V861) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191362, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191362) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191362, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191362) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0191363) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_0191360, 1, (STRLEN(?templateMotifCigarP0A9V8MF_0191360) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_0191360, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP0A9V861) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191362, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191362) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191362, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191362) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0191363) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb7) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse8) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, (?thisPositionOn11 - ?thisPositionOn10)) = 'QM')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a6')) AS ?annotation6) .
BIND(?this AS ?pfs5) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0A9V882 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V884 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_0191377 .
?templateMotifSequenceMatchRegionP0A9V882 faldo:begin ?templateMotifSequenceMatchBeginP0A9V883 .
?templateMotifSequenceMatchBeginP0A9V883 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V878 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V884 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_0191379 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191387 .
?targetMotifMatchRegionMatchBeginMF_0191387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191388 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_0191377, 1, (STRLEN(?templateMotifCigarP0A9V8MF_0191377) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_0191377, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP0A9V878) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191379, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191379) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191379, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191379) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0191380) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_0191377, 1, (STRLEN(?templateMotifCigarP0A9V8MF_0191377) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_0191377, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP0A9V878) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191379, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191379) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191379, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191379) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0191380) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'NNYMS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0A9V899 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_0191394 .
?templateMotifSequenceMatchRegionP0A9V899 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8100 .
?templateMotifSequenceMatchBeginP0A9V8100 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V895 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8101 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_0191396 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913104 .
?targetMotifMatchRegionMatchBeginMF_01913104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913105 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_0191394, 1, (STRLEN(?templateMotifCigarP0A9V8MF_0191394) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_0191394, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP0A9V895) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191396, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191396) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_0191396, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_0191396) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_0191396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0191397) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP0A9V8114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_01913109 .
?templateMotifSequenceMatchRegionP0A9V8114 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8115 .
?templateMotifSequenceMatchBeginP0A9V8115 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V8110 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8116 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_01913111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913119 .
?targetMotifMatchRegionMatchBeginMF_01913119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01913112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913120 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_01913109, 1, (STRLEN(?templateMotifCigarP0A9V8MF_01913109) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_01913109, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP0A9V8110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913111, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913111, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01913112) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP0A9V8129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_01913124 .
?templateMotifSequenceMatchRegionP0A9V8129 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8130 .
?templateMotifSequenceMatchBeginP0A9V8130 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V8125 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8131 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_01913126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913134 .
?targetMotifMatchRegionMatchBeginMF_01913134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01913127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913135 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_01913124, 1, (STRLEN(?templateMotifCigarP0A9V8MF_01913124) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_01913124, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A9V8125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913126, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913126, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01913127) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP0A9V8144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_01913139 .
?templateMotifSequenceMatchRegionP0A9V8144 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8145 .
?templateMotifSequenceMatchBeginP0A9V8145 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V8140 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8146 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_01913141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913149 .
?targetMotifMatchRegionMatchBeginMF_01913149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01913142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913150 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_01913139, 1, (STRLEN(?templateMotifCigarP0A9V8MF_01913139) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_01913139, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP0A9V8140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913141, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913141, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01913142) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0A9V8159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_01913154 .
?templateMotifSequenceMatchRegionP0A9V8159 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8160 .
?templateMotifSequenceMatchBeginP0A9V8160 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V8155 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8161 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_01913156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913164 .
?targetMotifMatchRegionMatchBeginMF_01913164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01913157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913165 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_01913154, 1, (STRLEN(?templateMotifCigarP0A9V8MF_01913154) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_01913154, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP0A9V8155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913156, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913156, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01913157) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A9V8174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9V8176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9V8MF_01913169 .
?templateMotifSequenceMatchRegionP0A9V8174 faldo:begin ?templateMotifSequenceMatchBeginP0A9V8175 .
?templateMotifSequenceMatchBeginP0A9V8175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9V8170 ;
faldo:reference isoform:P0A9V8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9V8176 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01913180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9V8MF_01913171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01913179 .
?targetMotifMatchRegionMatchBeginMF_01913179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01913172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01913180 edam:has_input signature:MF_01913 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9V8MF_01913169, 1, (STRLEN(?templateMotifCigarP0A9V8MF_01913169) - STRLEN(REPLACE(?templateMotifCigarP0A9V8MF_01913169, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP0A9V8170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913171, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9V8MF_01913171, 1, (STRLEN(?targetMotifMatchCigarP0A9V8MF_01913171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9V8MF_01913171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01913172) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01913a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
}
"xsd:string |
