| http://purl.uniprot.org/unirules/MF_01916#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:669505 up:source unirule:MF_01916 .
_:669506 up:source unirule:MF_01916 .
_:669507 up:source unirule:MF_01916 .
_:669508 up:source unirule:MF_01916 .
_:669509 up:source unirule:MF_01916 .
_:669510 up:source unirule:MF_01916 .
_:669511 up:source unirule:MF_01916 .
_:669512 up:source unirule:MF_01916 .
_:669513 up:source unirule:MF_01916 .
_:669514 up:source unirule:MF_01916 .
_:669515 up:source unirule:MF_01916 .
_:669516 up:source unirule:MF_01916 .
_:669517 up:source unirule:MF_01916 .
_:669518 up:source unirule:MF_01916 .
_:669519 up:source unirule:MF_01916 .
_:669520 up:source unirule:MF_01916 .
_:669521 up:source unirule:MF_01916 .
_:669522 up:source unirule:MF_01916 .
_:669523 up:source unirule:MF_01916 .
_:669524 up:source unirule:MF_01916 .
_:669525 up:source unirule:MF_01916 .
_:669526 up:source unirule:MF_01916 .
_:669527 up:source unirule:MF_01916 .
_:669528 up:source unirule:MF_01916 .
_:669529 up:source unirule:MF_01916 .
_:669530 up:source unirule:MF_01916 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005886 ,
GO:0008654 ,
GO:0016780 ,
keyword:1003 ,
keyword:1133 ,
keyword:1208 ,
keyword:443 ,
keyword:444 ,
keyword:472 ,
keyword:594 ,
keyword:808 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.-' ;
up:fullName 'Cardiolipin synthase' ;
up:shortName 'CL synthase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phospholipase D family. Cardiolipin synthase subfamily.' .
?case5 up:classifiedWith keyword:997 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Active_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?sam43 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane44 faldo:begin ?transmembraneb45 ;
faldo:end ?transmembranee46 .
?transmembraneb45 faldo:position ?transmembranebp47 .
?transmembranee46 faldo:position ?transmembraneep48 .
?keyword49 up:range ?transmembrane44 .
?keyword50 up:range ?transmembrane44 .
?keyword51 up:range ?transmembrane44 .
_:669531 a rdf:Statement ;
up:attribution _:669505 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:669532 a rdf:Statement ;
up:attribution _:669506 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:669533 a rdf:Statement ;
up:attribution _:669507 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:669534 a rdf:Statement ;
up:attribution _:669508 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:669535 a rdf:Statement ;
up:attribution _:669509 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:669536 a rdf:Statement ;
up:attribution _:669510 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:669537 a rdf:Statement ;
up:attribution _:669511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:669538 a rdf:Statement ;
up:attribution _:669512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:669539 a rdf:Statement ;
up:attribution _:669513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:594 .
_:669540 a rdf:Statement ;
up:attribution _:669514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1208 .
_:669541 a rdf:Statement ;
up:attribution _:669515 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:669542 a rdf:Statement ;
up:attribution _:669516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:669543 a rdf:Statement ;
up:attribution _:669517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:669544 a rdf:Statement ;
up:attribution _:669518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016780 .
_:669545 a rdf:Statement ;
up:attribution _:669519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008654 .
_:669546 a rdf:Statement ;
up:attribution _:669520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:669547 a rdf:Statement ;
up:attribution _:669521 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:669548 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:669549 a rdf:Statement ;
up:attribution _:669522 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:669550 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:669551 a rdf:Statement ;
up:attribution _:669523 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:669552 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:669553 a rdf:Statement ;
up:attribution _:669524 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:669554 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:669555 a rdf:Statement ;
up:attribution _:669525 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:669556 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:669557 a rdf:Statement ;
up:attribution _:669526 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:669558 a rdf:Statement ;
up:source unirule:MF_01916 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:669559 a rdf:Statement ;
up:attribution _:669527 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:669560 a rdf:Statement ;
up:attribution _:669528 ;
rdf:subject ?sam43 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:669561 a rdf:Statement ;
up:attribution _:669529 ;
rdf:subject ?sam43 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:669562 a rdf:Statement ;
up:attribution _:669530 ;
rdf:subject ?sam43 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01916
#Rule MF_01916 Created by:? on:2014-04-15 Modified by:Elisabeth Coudert on:2024-08-27
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01916 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01916a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP7104057 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7104059 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_0191652 .
?templateMotifSequenceMatchRegionP7104057 faldo:begin ?templateMotifSequenceMatchBeginP7104058 .
?templateMotifSequenceMatchBeginP7104058 faldo:position ?templateMotifSequenceMatchBeginPositionP7104053 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP7104059 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191663 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_0191654 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191662 .
?targetMotifMatchRegionMatchBeginMF_0191662 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191655 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191663 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_0191652, 1, (STRLEN(?templateMotifCigarP71040MF_0191652) - STRLEN(REPLACE(?templateMotifCigarP71040MF_0191652, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP7104053) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_0191654, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191654) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_0191654, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191654) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0191655) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP7104072 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7104074 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_0191667 .
?templateMotifSequenceMatchRegionP7104072 faldo:begin ?templateMotifSequenceMatchBeginP7104073 .
?templateMotifSequenceMatchBeginP7104073 faldo:position ?templateMotifSequenceMatchBeginPositionP7104068 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP7104074 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191678 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_0191669 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191677 .
?targetMotifMatchRegionMatchBeginMF_0191677 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191670 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191678 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_0191667, 1, (STRLEN(?templateMotifCigarP71040MF_0191667) - STRLEN(REPLACE(?templateMotifCigarP71040MF_0191667, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP7104068) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_0191669, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191669) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_0191669, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191669) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0191670) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP7104087 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7104089 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_0191682 .
?templateMotifSequenceMatchRegionP7104087 faldo:begin ?templateMotifSequenceMatchBeginP7104088 .
?templateMotifSequenceMatchBeginP7104088 faldo:position ?templateMotifSequenceMatchBeginPositionP7104083 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP7104089 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191693 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_0191684 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191692 .
?targetMotifMatchRegionMatchBeginMF_0191692 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191685 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191693 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_0191682, 1, (STRLEN(?templateMotifCigarP71040MF_0191682) - STRLEN(REPLACE(?templateMotifCigarP71040MF_0191682, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionP7104083) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_0191684, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191684) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_0191684, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191684) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0191685) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP71040102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP71040104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_0191697 .
?templateMotifSequenceMatchRegionP71040102 faldo:begin ?templateMotifSequenceMatchBeginP71040103 .
?templateMotifSequenceMatchBeginP71040103 faldo:position ?templateMotifSequenceMatchBeginPositionP7104098 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP71040104 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01916108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_0191699 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01916107 .
?targetMotifMatchRegionMatchBeginMF_01916107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01916100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01916108 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_0191697, 1, (STRLEN(?templateMotifCigarP71040MF_0191697) - STRLEN(REPLACE(?templateMotifCigarP71040MF_0191697, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP7104098) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_0191699, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191699) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_0191699, 1, (STRLEN(?targetMotifMatchCigarP71040MF_0191699) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_0191699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01916100) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP71040117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP71040119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_01916112 .
?templateMotifSequenceMatchRegionP71040117 faldo:begin ?templateMotifSequenceMatchBeginP71040118 .
?templateMotifSequenceMatchBeginP71040118 faldo:position ?templateMotifSequenceMatchBeginPositionP71040113 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP71040119 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01916123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_01916114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01916122 .
?targetMotifMatchRegionMatchBeginMF_01916122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01916115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01916123 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_01916112, 1, (STRLEN(?templateMotifCigarP71040MF_01916112) - STRLEN(REPLACE(?templateMotifCigarP71040MF_01916112, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP71040113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_01916114, 1, (STRLEN(?targetMotifMatchCigarP71040MF_01916114) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_01916114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_01916114, 1, (STRLEN(?targetMotifMatchCigarP71040MF_01916114) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_01916114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01916115) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP71040132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP71040134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP71040MF_01916127 .
?templateMotifSequenceMatchRegionP71040132 faldo:begin ?templateMotifSequenceMatchBeginP71040133 .
?templateMotifSequenceMatchBeginP71040133 faldo:position ?templateMotifSequenceMatchBeginPositionP71040128 ;
faldo:reference isoform:P71040-1 .
?templateMotifSequenceProfileAlignmentOperationP71040134 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01916138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP71040MF_01916129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01916137 .
?targetMotifMatchRegionMatchBeginMF_01916137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01916130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01916138 edam:has_input signature:MF_01916 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP71040MF_01916127, 1, (STRLEN(?templateMotifCigarP71040MF_01916127) - STRLEN(REPLACE(?templateMotifCigarP71040MF_01916127, CONCAT('^(?:-*[^-]){', STR(((407 - ?templateMotifSequenceMatchBeginPositionP71040128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP71040MF_01916129, 1, (STRLEN(?targetMotifMatchCigarP71040MF_01916129) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_01916129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP71040MF_01916129, 1, (STRLEN(?targetMotifMatchCigarP71040MF_01916129) - STRLEN(REPLACE(?targetMotifMatchCigarP71040MF_01916129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01916130) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p142 .
?p142 skos:narrower .
}
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p143 .
?p143 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p144 .
?p144 skos:narrower .
}
}
BIND(?this AS ?case6) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane145 ;
up:sequence ?thisSequence .
?samtransmembrane145 up:range ?samtransmembraner146 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner146 faldo:begin ?samtransmembraneb147 ;
faldo:end ?samtransmembranee148 .
?samtransmembraneb147 faldo:position ?samtransmembranebp149 ;
faldo:reference ?thisSequence .
?samtransmembranee148 faldo:position ?samtransmembraneep150 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam43) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01916a49')) AS ?keyword49) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a50')) AS ?keyword50) .
BIND(URI(CONCAT(STR(?this), '#MF_01916a51')) AS ?keyword51) .
}
"xsd:string |
