| http://purl.uniprot.org/unirules/MF_01930#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:674905 up:source unirule:MF_01930 .
_:674906 up:source unirule:MF_01930 .
_:674907 up:source unirule:MF_01930 .
_:674908 up:source unirule:MF_01930 .
_:674909 up:source unirule:MF_01930 .
_:674910 up:source unirule:MF_01930 .
_:674911 up:source unirule:MF_01930 .
_:674912 up:source unirule:MF_01930 .
_:674913 up:source unirule:MF_01930 .
_:674914 up:source unirule:MF_01930 .
_:674915 up:source unirule:MF_01930 .
_:674916 up:source unirule:MF_01930 .
_:674917 up:source unirule:MF_01930 .
_:674918 up:source unirule:MF_01930 .
_:674919 up:source unirule:MF_01930 .
_:674920 up:source unirule:MF_01930 .
_:674921 up:source unirule:MF_01930 .
_:674922 up:source unirule:MF_01930 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004644 ,
GO:0006189 ,
keyword:658 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.2.2' ;
up:fullName 'Phosphoribosylglycinamide formyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName "5'-phosphoribosylglycinamide transformylase" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'GAR transformylase' ;
up:shortName 'GART' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'purN' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GART family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:143788 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:195366 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:195366 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:195366 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Raises pKa of active site His' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
_:674923 a rdf:Statement ;
up:attribution _:674905 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:674924 a rdf:Statement ;
up:attribution _:674906 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:674925 a rdf:Statement ;
up:attribution _:674907 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:674926 a rdf:Statement ;
up:attribution _:674908 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:674927 a rdf:Statement ;
up:attribution _:674909 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:674928 a rdf:Statement ;
up:attribution _:674910 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:674929 a rdf:Statement ;
up:attribution _:674911 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:674930 a rdf:Statement ;
up:attribution _:674912 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:674931 a rdf:Statement ;
up:attribution _:674913 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:674932 a rdf:Statement ;
up:attribution _:674914 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:674933 a rdf:Statement ;
up:attribution _:674915 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004644 .
_:674934 a rdf:Statement ;
up:attribution _:674916 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006189 .
_:674935 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:674936 a rdf:Statement ;
up:attribution _:674917 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:674937 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:674938 a rdf:Statement ;
up:attribution _:674918 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:674939 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:674940 a rdf:Statement ;
up:attribution _:674919 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:674941 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:674942 a rdf:Statement ;
up:attribution _:674920 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:674943 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:674944 a rdf:Statement ;
up:attribution _:674921 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:674945 a rdf:Statement ;
up:source unirule:MF_01930 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:674946 a rdf:Statement ;
up:attribution _:674922 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01930
#Rule MF_01930 Created by:? on:2014-09-01 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01930 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01930a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP0817954 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0817956 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_0193049 .
?templateMotifSequenceMatchRegionP0817954 faldo:begin ?templateMotifSequenceMatchBeginP0817955 .
?templateMotifSequenceMatchBeginP0817955 faldo:position ?templateMotifSequenceMatchBeginPositionP0817950 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP0817956 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193060 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_0193051 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193059 .
?targetMotifMatchRegionMatchBeginMF_0193059 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193052 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193060 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193049, 1, (STRLEN(?templateMotifCigarP08179MF_0193049) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193049, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP0817950) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_0193051, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193051) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193051, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_0193051, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193051) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193051, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0193052) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193049, 1, (STRLEN(?templateMotifCigarP08179MF_0193049) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193049, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0817950) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_0193051, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193051) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193051, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_0193051, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193051) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193051, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0193052) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('G[ST]N', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0817971 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0817973 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_0193066 .
?templateMotifSequenceMatchRegionP0817971 faldo:begin ?templateMotifSequenceMatchBeginP0817972 .
?templateMotifSequenceMatchBeginP0817972 faldo:position ?templateMotifSequenceMatchBeginPositionP0817967 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP0817973 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193077 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_0193068 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193076 .
?targetMotifMatchRegionMatchBeginMF_0193076 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193069 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193077 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193066, 1, (STRLEN(?templateMotifCigarP08179MF_0193066) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193066, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP0817967) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_0193068, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193068) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_0193068, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193068) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0193069) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193066, 1, (STRLEN(?templateMotifCigarP08179MF_0193066) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193066, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0817967) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_0193068, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193068) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_0193068, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193068) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0193069) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[MLF][RK][IL][LVI]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0817988 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0817990 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_0193083 .
?templateMotifSequenceMatchRegionP0817988 faldo:begin ?templateMotifSequenceMatchBeginP0817989 .
?templateMotifSequenceMatchBeginP0817989 faldo:position ?templateMotifSequenceMatchBeginPositionP0817984 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP0817990 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193094 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_0193085 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193093 .
?targetMotifMatchRegionMatchBeginMF_0193093 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193086 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193094 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193083, 1, (STRLEN(?templateMotifCigarP08179MF_0193083) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193083, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP0817984) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_0193085, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193085) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193085, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_0193085, 1, (STRLEN(?targetMotifMatchCigarP08179MF_0193085) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_0193085, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0193086) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP08179103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08179105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_0193098 .
?templateMotifSequenceMatchRegionP08179103 faldo:begin ?templateMotifSequenceMatchBeginP08179104 .
?templateMotifSequenceMatchBeginP08179104 faldo:position ?templateMotifSequenceMatchBeginPositionP0817999 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP08179105 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01930109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_01930100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01930108 .
?targetMotifMatchRegionMatchBeginMF_01930108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01930101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01930109 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_0193098, 1, (STRLEN(?templateMotifCigarP08179MF_0193098) - STRLEN(REPLACE(?templateMotifCigarP08179MF_0193098, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0817999) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_01930100, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930100) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_01930100, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930100) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01930101) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP08179118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08179120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_01930113 .
?templateMotifSequenceMatchRegionP08179118 faldo:begin ?templateMotifSequenceMatchBeginP08179119 .
?templateMotifSequenceMatchBeginP08179119 faldo:position ?templateMotifSequenceMatchBeginPositionP08179114 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP08179120 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01930124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_01930115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01930123 .
?targetMotifMatchRegionMatchBeginMF_01930123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01930116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01930124 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_01930113, 1, (STRLEN(?templateMotifCigarP08179MF_01930113) - STRLEN(REPLACE(?templateMotifCigarP08179MF_01930113, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP08179114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_01930115, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930115) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_01930115, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930115) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01930116) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP08179133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08179135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08179MF_01930128 .
?templateMotifSequenceMatchRegionP08179133 faldo:begin ?templateMotifSequenceMatchBeginP08179134 .
?templateMotifSequenceMatchBeginP08179134 faldo:position ?templateMotifSequenceMatchBeginPositionP08179129 ;
faldo:reference isoform:P08179-1 .
?templateMotifSequenceProfileAlignmentOperationP08179135 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01930139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08179MF_01930130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01930138 .
?targetMotifMatchRegionMatchBeginMF_01930138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01930131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01930139 edam:has_input signature:MF_01930 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08179MF_01930128, 1, (STRLEN(?templateMotifCigarP08179MF_01930128) - STRLEN(REPLACE(?templateMotifCigarP08179MF_01930128, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP08179129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08179MF_01930130, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930130) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08179MF_01930130, 1, (STRLEN(?targetMotifMatchCigarP08179MF_01930130) - STRLEN(REPLACE(?targetMotifMatchCigarP08179MF_01930130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01930131) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01930a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
}
"xsd:string |
