| http://purl.uniprot.org/unirules/MF_01933#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:676084 up:source unirule:MF_01933 .
_:676085 up:source unirule:MF_01933 .
_:676086 up:source unirule:MF_01933 .
_:676087 up:source unirule:MF_01933 .
_:676088 up:source unirule:MF_01933 .
_:676089 up:source unirule:MF_01933 .
_:676090 up:source unirule:MF_01933 .
_:676091 up:source unirule:MF_01933 .
_:676092 up:source unirule:MF_01933 .
_:676093 up:source unirule:MF_01933 .
_:676094 up:source unirule:MF_01933 .
_:676095 up:source unirule:MF_01933 .
_:676096 up:source unirule:MF_01933 .
_:676097 up:source unirule:MF_01933 .
_:676098 up:source unirule:MF_01933 .
_:676099 up:source unirule:MF_01933 .
_:676100 up:source unirule:MF_01933 .
_:676101 up:source unirule:MF_01933 .
_:676102 up:source unirule:MF_01933 .
_:676103 up:source unirule:MF_01933 .
_:676104 up:source unirule:MF_01933 .
_:676105 up:source unirule:MF_01933 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0016836 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.113' ;
up:fullName 'o-succinylbenzoate synthase' ;
up:shortName 'OSB synthase' ,
'OSBS' ;
rdf:type up:Structured_Name .
?name1 up:fullName "4-(2'-carboxyphenyl)-4-oxybutyric acid synthase" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'o-succinylbenzoic acid synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'menC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 4/7.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 2 subfamily.' .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case11 up:classifiedWith GO:0042372 .
?case12 up:classifiedWith GO:0009234 ,
keyword:474 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:18420 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:676106 a rdf:Statement ;
up:attribution _:676084 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:676107 a rdf:Statement ;
up:attribution _:676085 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:676108 a rdf:Statement ;
up:attribution _:676086 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:676109 a rdf:Statement ;
up:attribution _:676087 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:676110 a rdf:Statement ;
up:attribution _:676088 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:676111 a rdf:Statement ;
up:attribution _:676089 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:676112 a rdf:Statement ;
up:attribution _:676090 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:676113 a rdf:Statement ;
up:attribution _:676091 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:676114 a rdf:Statement ;
up:attribution _:676092 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:676115 a rdf:Statement ;
up:attribution _:676093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:676116 a rdf:Statement ;
up:attribution _:676094 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:676117 a rdf:Statement ;
up:attribution _:676095 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:676118 a rdf:Statement ;
up:attribution _:676096 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:676119 a rdf:Statement ;
up:attribution _:676097 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:676120 a rdf:Statement ;
up:attribution _:676098 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042372 .
_:676121 a rdf:Statement ;
up:attribution _:676099 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:676122 a rdf:Statement ;
up:attribution _:676100 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:676123 a rdf:Statement ;
up:source unirule:MF_01933 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:676124 a rdf:Statement ;
up:attribution _:676101 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:676125 a rdf:Statement ;
up:source unirule:MF_01933 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:676126 a rdf:Statement ;
up:attribution _:676102 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:676127 a rdf:Statement ;
up:source unirule:MF_01933 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:676128 a rdf:Statement ;
up:attribution _:676103 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:676129 a rdf:Statement ;
up:source unirule:MF_01933 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:676130 a rdf:Statement ;
up:attribution _:676104 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:676131 a rdf:Statement ;
up:source unirule:MF_01933 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:676132 a rdf:Statement ;
up:attribution _:676105 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01933
#Rule MF_01933 Created by:? on:2014-10-06 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon44 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01933 .
?thisOrganism rdfs:subClassOf+ ?supertaxon44 .
BIND(URI(CONCAT(STR(?this), '#MF_01933a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionO3451450 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3451452 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34514MF_0193345 .
?templateMotifSequenceMatchRegionO3451450 faldo:begin ?templateMotifSequenceMatchBeginO3451451 .
?templateMotifSequenceMatchBeginO3451451 faldo:position ?templateMotifSequenceMatchBeginPositionO3451446 ;
faldo:reference isoform:O34514-1 .
?templateMotifSequenceProfileAlignmentOperationO3451452 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34514MF_0193347 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193355 .
?targetMotifMatchRegionMatchBeginMF_0193355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193356 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34514MF_0193345, 1, (STRLEN(?templateMotifCigarO34514MF_0193345) - STRLEN(REPLACE(?templateMotifCigarO34514MF_0193345, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionO3451446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0193348) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34514MF_0193345, 1, (STRLEN(?templateMotifCigarO34514MF_0193345) - STRLEN(REPLACE(?templateMotifCigarO34514MF_0193345, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionO3451446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0193348) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34514MF_0193345, 1, (STRLEN(?templateMotifCigarO34514MF_0193345) - STRLEN(REPLACE(?templateMotifCigarO34514MF_0193345, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionO3451446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34514MF_0193347, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193347) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0193348) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionO3451471 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3451473 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34514MF_0193366 .
?templateMotifSequenceMatchRegionO3451471 faldo:begin ?templateMotifSequenceMatchBeginO3451472 .
?templateMotifSequenceMatchBeginO3451472 faldo:position ?templateMotifSequenceMatchBeginPositionO3451467 ;
faldo:reference isoform:O34514-1 .
?templateMotifSequenceProfileAlignmentOperationO3451473 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34514MF_0193368 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193376 .
?targetMotifMatchRegionMatchBeginMF_0193376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193377 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34514MF_0193366, 1, (STRLEN(?templateMotifCigarO34514MF_0193366) - STRLEN(REPLACE(?templateMotifCigarO34514MF_0193366, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionO3451467) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34514MF_0193368, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193368) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34514MF_0193368, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193368) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0193369) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionO3451486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3451488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34514MF_0193381 .
?templateMotifSequenceMatchRegionO3451486 faldo:begin ?templateMotifSequenceMatchBeginO3451487 .
?templateMotifSequenceMatchBeginO3451487 faldo:position ?templateMotifSequenceMatchBeginPositionO3451482 ;
faldo:reference isoform:O34514-1 .
?templateMotifSequenceProfileAlignmentOperationO3451488 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34514MF_0193383 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193391 .
?targetMotifMatchRegionMatchBeginMF_0193391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193392 edam:has_input signature:MF_01933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34514MF_0193381, 1, (STRLEN(?templateMotifCigarO34514MF_0193381) - STRLEN(REPLACE(?templateMotifCigarO34514MF_0193381, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionO3451482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34514MF_0193383, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193383) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34514MF_0193383, 1, (STRLEN(?targetMotifMatchCigarO34514MF_0193383) - STRLEN(REPLACE(?targetMotifMatchCigarO34514MF_0193383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0193384) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01933a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag96) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag96, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
