| http://purl.uniprot.org/unirules/MF_01984#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:700053 up:source unirule:MF_01984 .
_:700054 up:source unirule:MF_01984 .
_:700055 up:source unirule:MF_01984 .
_:700056 up:source unirule:MF_01984 .
_:700057 up:source unirule:MF_01984 .
_:700058 up:source unirule:MF_01984 .
_:700059 up:source unirule:MF_01984 .
_:700060 up:source unirule:MF_01984 .
_:700061 up:source unirule:MF_01984 .
_:700062 up:source unirule:MF_01984 .
_:700063 up:source unirule:MF_01984 .
_:700064 up:source unirule:MF_01984 .
_:700065 up:source unirule:MF_01984 .
_:700066 up:source unirule:MF_01984 .
_:700067 up:source unirule:MF_01984 .
_:700068 up:source unirule:MF_01984 .
_:700069 up:source unirule:MF_01984 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0004659 ,
keyword:285 ,
keyword:288 ,
keyword:637 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.129' ;
up:fullName 'Flavin prenyltransferase UbiX' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ubiX' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UbiX/PAD1 family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:58210 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:58210 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:58210 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:58210 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:58210 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:88052 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:88052 .
_:700070 a rdf:Statement ;
up:attribution _:700053 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:700071 a rdf:Statement ;
up:attribution _:700054 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:700072 a rdf:Statement ;
up:attribution _:700055 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:700073 a rdf:Statement ;
up:attribution _:700056 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:700074 a rdf:Statement ;
up:attribution _:700057 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:700075 a rdf:Statement ;
up:attribution _:700058 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:700076 a rdf:Statement ;
up:attribution _:700059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:700077 a rdf:Statement ;
up:attribution _:700060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:637 .
_:700078 a rdf:Statement ;
up:attribution _:700061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:700079 a rdf:Statement ;
up:attribution _:700062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004659 .
_:700080 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:700081 a rdf:Statement ;
up:attribution _:700063 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:700082 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:700083 a rdf:Statement ;
up:attribution _:700064 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:700084 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:700085 a rdf:Statement ;
up:attribution _:700065 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:700086 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:700087 a rdf:Statement ;
up:attribution _:700066 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:700088 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:700089 a rdf:Statement ;
up:attribution _:700067 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:700090 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:700091 a rdf:Statement ;
up:attribution _:700068 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:700092 a rdf:Statement ;
up:source unirule:MF_01984 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:700093 a rdf:Statement ;
up:attribution _:700069 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01984
#Rule MF_01984 Created by:? on:2015-09-01 Modified by:Edouard de Castro on:2024-09-19
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01986 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01986 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01984a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionQ9HX0860 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0862 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_0198455 .
?templateMotifSequenceMatchRegionQ9HX0860 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0861 .
?templateMotifSequenceMatchBeginQ9HX0861 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0856 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX0862 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198466 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_0198457 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198465 .
?targetMotifMatchRegionMatchBeginMF_0198465 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198458 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198466 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198455, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198455) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198455, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ9HX0856) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0198458) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198455, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198455) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198455, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ9HX0856) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198457, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198457) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0198458) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('G[AGS][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionQ9HX0877 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0879 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_0198472 .
?templateMotifSequenceMatchRegionQ9HX0877 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0878 .
?templateMotifSequenceMatchBeginQ9HX0878 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0873 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX0879 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198483 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_0198474 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198482 .
?targetMotifMatchRegionMatchBeginMF_0198482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198475 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198483 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198472, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198472) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198472, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ9HX0873) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0198475) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198472, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198472) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198472, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9HX0873) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198474, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198474) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0198475) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ9HX0894 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX0896 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_0198489 .
?templateMotifSequenceMatchRegionQ9HX0894 faldo:begin ?templateMotifSequenceMatchBeginQ9HX0895 .
?templateMotifSequenceMatchBeginQ9HX0895 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX0890 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX0896 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_0198491 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198499 .
?targetMotifMatchRegionMatchBeginMF_0198499 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198492 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984100 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_0198489, 1, (STRLEN(?templateMotifCigarQ9HX08MF_0198489) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_0198489, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ9HX0890) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198491, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_0198491, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_0198491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_0198491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0198492) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ9HX08109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_01984104 .
?templateMotifSequenceMatchRegionQ9HX08109 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08110 .
?templateMotifSequenceMatchBeginQ9HX08110 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08105 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX08111 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_01984106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984114 .
?targetMotifMatchRegionMatchBeginMF_01984114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984115 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984104, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984104) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984104, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ9HX08105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984106, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984106, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01984107) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ9HX08124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_01984119 .
?templateMotifSequenceMatchRegionQ9HX08124 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08125 .
?templateMotifSequenceMatchBeginQ9HX08125 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08120 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX08126 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_01984121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984129 .
?targetMotifMatchRegionMatchBeginMF_01984129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984130 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984119, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984119) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984119, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionQ9HX08120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984121, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984121, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01984122) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ9HX08139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_01984134 .
?templateMotifSequenceMatchRegionQ9HX08139 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08140 .
?templateMotifSequenceMatchBeginQ9HX08140 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08135 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX08141 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_01984136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984144 .
?targetMotifMatchRegionMatchBeginMF_01984144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984145 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984134, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984134) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984134, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9HX08135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984136, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984136, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01984137) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ9HX08154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HX08156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HX08MF_01984149 .
?templateMotifSequenceMatchRegionQ9HX08154 faldo:begin ?templateMotifSequenceMatchBeginQ9HX08155 .
?templateMotifSequenceMatchBeginQ9HX08155 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HX08150 ;
faldo:reference isoform:Q9HX08-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HX08156 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HX08MF_01984151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984159 .
?targetMotifMatchRegionMatchBeginMF_01984159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984160 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HX08MF_01984149, 1, (STRLEN(?templateMotifCigarQ9HX08MF_01984149) - STRLEN(REPLACE(?templateMotifCigarQ9HX08MF_01984149, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ9HX08150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984151, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HX08MF_01984151, 1, (STRLEN(?targetMotifMatchCigarQ9HX08MF_01984151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HX08MF_01984151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01984152) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01984a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
}
"xsd:string |
