| http://purl.uniprot.org/unirules/MF_02035#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:717420 up:source unirule:MF_02035 .
_:717421 up:source unirule:MF_02035 .
_:717422 up:source unirule:MF_02035 .
_:717423 up:source unirule:MF_02035 .
_:717424 up:source unirule:MF_02035 .
_:717425 up:source unirule:MF_02035 .
_:717426 up:source unirule:MF_02035 .
_:717427 up:source unirule:MF_02035 .
_:717428 up:source unirule:MF_02035 .
_:717429 up:source unirule:MF_02035 .
_:717430 up:source unirule:MF_02035 .
_:717431 up:source unirule:MF_02035 .
_:717432 up:source unirule:MF_02035 .
_:717433 up:source unirule:MF_02035 .
_:717434 up:source unirule:MF_02035 .
_:717435 up:source unirule:MF_02035 .
_:717436 up:source unirule:MF_02035 .
_:717437 up:source unirule:MF_02035 .
_:717438 up:source unirule:MF_02035 .
_:717439 up:source unirule:MF_02035 .
_:717440 up:source unirule:MF_02035 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005506 ,
GO:0016705 ,
GO:0052699 ,
keyword:408 ,
keyword:479 ,
keyword:503 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.99.50' ;
up:fullName 'Hercynine oxygenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Gamma-glutamyl hercynylcysteine S-oxide synthase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'egtB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the oxidative sulfurization of hercynine (N-alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; ergothioneine biosynthesis.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the EgtB family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58173 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:24875 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:24875 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:24875 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58173 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58173 .
_:717441 a rdf:Statement ;
up:attribution _:717420 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:717442 a rdf:Statement ;
up:attribution _:717421 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:717443 a rdf:Statement ;
up:attribution _:717422 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:717444 a rdf:Statement ;
up:attribution _:717423 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:717445 a rdf:Statement ;
up:attribution _:717424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:717446 a rdf:Statement ;
up:attribution _:717425 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:717447 a rdf:Statement ;
up:attribution _:717426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:717448 a rdf:Statement ;
up:attribution _:717427 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:717449 a rdf:Statement ;
up:attribution _:717428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:717450 a rdf:Statement ;
up:attribution _:717429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:717451 a rdf:Statement ;
up:attribution _:717430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:717452 a rdf:Statement ;
up:attribution _:717431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:717453 a rdf:Statement ;
up:attribution _:717432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:717454 a rdf:Statement ;
up:attribution _:717433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016705 .
_:717455 a rdf:Statement ;
up:attribution _:717434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052699 .
_:717456 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:717457 a rdf:Statement ;
up:attribution _:717435 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:717458 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:717459 a rdf:Statement ;
up:attribution _:717436 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:717460 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:717461 a rdf:Statement ;
up:attribution _:717437 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:717462 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:717463 a rdf:Statement ;
up:attribution _:717438 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:717464 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:717465 a rdf:Statement ;
up:attribution _:717439 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:717466 a rdf:Statement ;
up:source unirule:MF_02035 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:717467 a rdf:Statement ;
up:attribution _:717440 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02035
#Rule MF_02035 Created by:? on:2015-07-01 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02035 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02035a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionG7CFI356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_0203551 .
?templateMotifSequenceMatchRegionG7CFI356 faldo:begin ?templateMotifSequenceMatchBeginG7CFI357 .
?templateMotifSequenceMatchBeginG7CFI357 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI352 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI358 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203562 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_0203553 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203561 .
?targetMotifMatchRegionMatchBeginMF_0203561 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203554 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203562 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_0203551, 1, (STRLEN(?templateMotifCigarG7CFI3MF_0203551) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_0203551, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionG7CFI352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203553, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203553) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203553, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203553, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203553) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203553, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0203554) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_0203551, 1, (STRLEN(?templateMotifCigarG7CFI3MF_0203551) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_0203551, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionG7CFI352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203553, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203553) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203553, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203553, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203553) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203553, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0203554) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionG7CFI373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_0203568 .
?templateMotifSequenceMatchRegionG7CFI373 faldo:begin ?templateMotifSequenceMatchBeginG7CFI374 .
?templateMotifSequenceMatchBeginG7CFI374 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI369 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI375 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203579 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_0203570 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203578 .
?targetMotifMatchRegionMatchBeginMF_0203578 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203571 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203579 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_0203568, 1, (STRLEN(?templateMotifCigarG7CFI3MF_0203568) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_0203568, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionG7CFI369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203570, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203570) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203570, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203570) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0203571) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionG7CFI388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_0203583 .
?templateMotifSequenceMatchRegionG7CFI388 faldo:begin ?templateMotifSequenceMatchBeginG7CFI389 .
?templateMotifSequenceMatchBeginG7CFI389 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI384 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI390 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203594 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_0203585 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203593 .
?targetMotifMatchRegionMatchBeginMF_0203593 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203586 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203594 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_0203583, 1, (STRLEN(?templateMotifCigarG7CFI3MF_0203583) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_0203583, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionG7CFI384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203585, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203585) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203585, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_0203585, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_0203585) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_0203585, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0203586) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionG7CFI3103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI3105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_0203598 .
?templateMotifSequenceMatchRegionG7CFI3103 faldo:begin ?templateMotifSequenceMatchBeginG7CFI3104 .
?templateMotifSequenceMatchBeginG7CFI3104 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI399 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI3105 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02035109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_02035100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02035108 .
?targetMotifMatchRegionMatchBeginMF_02035108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02035101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02035109 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_0203598, 1, (STRLEN(?templateMotifCigarG7CFI3MF_0203598) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_0203598, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionG7CFI399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035100, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035100) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035100, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035100) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_02035101) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionG7CFI3118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI3120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_02035113 .
?templateMotifSequenceMatchRegionG7CFI3118 faldo:begin ?templateMotifSequenceMatchBeginG7CFI3119 .
?templateMotifSequenceMatchBeginG7CFI3119 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI3114 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI3120 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02035124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_02035115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02035123 .
?targetMotifMatchRegionMatchBeginMF_02035123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02035116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02035124 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_02035113, 1, (STRLEN(?templateMotifCigarG7CFI3MF_02035113) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_02035113, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionG7CFI3114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035115, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035115) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035115, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035115) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02035116) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionG7CFI3133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG7CFI3135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG7CFI3MF_02035128 .
?templateMotifSequenceMatchRegionG7CFI3133 faldo:begin ?templateMotifSequenceMatchBeginG7CFI3134 .
?templateMotifSequenceMatchBeginG7CFI3134 faldo:position ?templateMotifSequenceMatchBeginPositionG7CFI3129 ;
faldo:reference isoform:G7CFI3-1 .
?templateMotifSequenceProfileAlignmentOperationG7CFI3135 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02035139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG7CFI3MF_02035130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02035138 .
?targetMotifMatchRegionMatchBeginMF_02035138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02035131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02035139 edam:has_input signature:MF_02035 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG7CFI3MF_02035128, 1, (STRLEN(?templateMotifCigarG7CFI3MF_02035128) - STRLEN(REPLACE(?templateMotifCigarG7CFI3MF_02035128, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionG7CFI3129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035130, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035130) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG7CFI3MF_02035130, 1, (STRLEN(?targetMotifMatchCigarG7CFI3MF_02035130) - STRLEN(REPLACE(?targetMotifMatchCigarG7CFI3MF_02035130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02035131) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02035a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
