| http://purl.uniprot.org/unirules/MF_02048#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:723426 up:source unirule:MF_02048 .
_:723427 up:source unirule:MF_02048 .
_:723428 up:source unirule:MF_02048 .
_:723429 up:source unirule:MF_02048 .
_:723430 up:source unirule:MF_02048 .
_:723431 up:source unirule:MF_02048 .
_:723432 up:source unirule:MF_02048 .
_:723433 up:source unirule:MF_02048 .
_:723434 up:source unirule:MF_02048 .
_:723435 up:source unirule:MF_02048 .
_:723436 up:source unirule:MF_02048 .
_:723437 up:source unirule:MF_02048 .
_:723438 up:source unirule:MF_02048 .
_:723439 up:source unirule:MF_02048 .
_:723440 up:source unirule:MF_02048 .
_:723441 up:source unirule:MF_02048 .
_:723442 up:source unirule:MF_02048 .
_:723443 up:source unirule:MF_02048 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0019478 ,
GO:0051499 ,
keyword:378 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.1.96' ;
up:fullName 'D-aminoacyl-tRNA deacylase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dtd3' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of D-tyrosyl-tRNA(Tyr).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 divalent metal cations per subunit' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. TatD-type hydrolase family. DTD3 subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:60240 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:60240 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:60240 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:60240 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:60240 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:60240 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:60240 .
_:723444 a rdf:Statement ;
up:attribution _:723426 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:723445 a rdf:Statement ;
up:attribution _:723427 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:723446 a rdf:Statement ;
up:attribution _:723428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:723447 a rdf:Statement ;
up:attribution _:723429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:723448 a rdf:Statement ;
up:attribution _:723430 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:723449 a rdf:Statement ;
up:attribution _:723431 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:723450 a rdf:Statement ;
up:attribution _:723432 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:723451 a rdf:Statement ;
up:attribution _:723433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:723452 a rdf:Statement ;
up:attribution _:723434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:723453 a rdf:Statement ;
up:attribution _:723435 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051499 .
_:723454 a rdf:Statement ;
up:attribution _:723436 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019478 .
_:723455 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:723456 a rdf:Statement ;
up:attribution _:723437 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:723457 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:723458 a rdf:Statement ;
up:attribution _:723438 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:723459 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:723460 a rdf:Statement ;
up:attribution _:723439 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:723461 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:723462 a rdf:Statement ;
up:attribution _:723440 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:723463 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:723464 a rdf:Statement ;
up:attribution _:723441 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:723465 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:723466 a rdf:Statement ;
up:attribution _:723442 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:723467 a rdf:Statement ;
up:source unirule:MF_02048 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:723468 a rdf:Statement ;
up:attribution _:723443 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02048
#Rule MF_02048 Created by:? on:2015-10-14 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02048 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(URI(CONCAT(STR(?this), '#MF_02048a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP7333563 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7333565 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_0204858 .
?templateMotifSequenceMatchRegionP7333563 faldo:begin ?templateMotifSequenceMatchBeginP7333564 .
?templateMotifSequenceMatchBeginP7333564 faldo:position ?templateMotifSequenceMatchBeginPositionP7333559 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP7333565 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204869 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_0204860 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204868 .
?targetMotifMatchRegionMatchBeginMF_0204868 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204861 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204869 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_0204858, 1, (STRLEN(?templateMotifCigarP73335MF_0204858) - STRLEN(REPLACE(?templateMotifCigarP73335MF_0204858, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP7333559) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_0204860, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204860) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_0204860, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204860) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0204861) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP7333578 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7333580 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_0204873 .
?templateMotifSequenceMatchRegionP7333578 faldo:begin ?templateMotifSequenceMatchBeginP7333579 .
?templateMotifSequenceMatchBeginP7333579 faldo:position ?templateMotifSequenceMatchBeginPositionP7333574 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP7333580 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204884 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_0204875 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204883 .
?targetMotifMatchRegionMatchBeginMF_0204883 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204876 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204884 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_0204873, 1, (STRLEN(?templateMotifCigarP73335MF_0204873) - STRLEN(REPLACE(?templateMotifCigarP73335MF_0204873, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP7333574) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_0204875, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204875) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204875, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_0204875, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204875) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204875, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0204876) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP7333593 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7333595 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_0204888 .
?templateMotifSequenceMatchRegionP7333593 faldo:begin ?templateMotifSequenceMatchBeginP7333594 .
?templateMotifSequenceMatchBeginP7333594 faldo:position ?templateMotifSequenceMatchBeginPositionP7333589 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP7333595 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204899 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_0204890 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204898 .
?targetMotifMatchRegionMatchBeginMF_0204898 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204891 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0204899 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_0204888, 1, (STRLEN(?templateMotifCigarP73335MF_0204888) - STRLEN(REPLACE(?templateMotifCigarP73335MF_0204888, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP7333589) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_0204890, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204890) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_0204890, 1, (STRLEN(?targetMotifMatchCigarP73335MF_0204890) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_0204890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0204891) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP73335108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP73335110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_02048103 .
?templateMotifSequenceMatchRegionP73335108 faldo:begin ?templateMotifSequenceMatchBeginP73335109 .
?templateMotifSequenceMatchBeginP73335109 faldo:position ?templateMotifSequenceMatchBeginPositionP73335104 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP73335110 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02048114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_02048105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02048113 .
?targetMotifMatchRegionMatchBeginMF_02048113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02048106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02048114 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_02048103, 1, (STRLEN(?templateMotifCigarP73335MF_02048103) - STRLEN(REPLACE(?templateMotifCigarP73335MF_02048103, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP73335104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_02048105, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048105) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_02048105, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048105) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_02048106) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP73335123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP73335125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_02048118 .
?templateMotifSequenceMatchRegionP73335123 faldo:begin ?templateMotifSequenceMatchBeginP73335124 .
?templateMotifSequenceMatchBeginP73335124 faldo:position ?templateMotifSequenceMatchBeginPositionP73335119 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP73335125 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02048129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_02048120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02048128 .
?targetMotifMatchRegionMatchBeginMF_02048128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02048121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02048129 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_02048118, 1, (STRLEN(?templateMotifCigarP73335MF_02048118) - STRLEN(REPLACE(?templateMotifCigarP73335MF_02048118, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP73335119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_02048120, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048120) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_02048120, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048120) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_02048121) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP73335138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP73335140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_02048133 .
?templateMotifSequenceMatchRegionP73335138 faldo:begin ?templateMotifSequenceMatchBeginP73335139 .
?templateMotifSequenceMatchBeginP73335139 faldo:position ?templateMotifSequenceMatchBeginPositionP73335134 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP73335140 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02048144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_02048135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02048143 .
?targetMotifMatchRegionMatchBeginMF_02048143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02048136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02048144 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_02048133, 1, (STRLEN(?templateMotifCigarP73335MF_02048133) - STRLEN(REPLACE(?templateMotifCigarP73335MF_02048133, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP73335134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_02048135, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048135) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_02048135, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048135) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_02048136) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP73335153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP73335155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP73335MF_02048148 .
?templateMotifSequenceMatchRegionP73335153 faldo:begin ?templateMotifSequenceMatchBeginP73335154 .
?templateMotifSequenceMatchBeginP73335154 faldo:position ?templateMotifSequenceMatchBeginPositionP73335149 ;
faldo:reference isoform:P73335-1 .
?templateMotifSequenceProfileAlignmentOperationP73335155 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02048159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP73335MF_02048150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02048158 .
?targetMotifMatchRegionMatchBeginMF_02048158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02048151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02048159 edam:has_input signature:MF_02048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP73335MF_02048148, 1, (STRLEN(?templateMotifCigarP73335MF_02048148) - STRLEN(REPLACE(?templateMotifCigarP73335MF_02048148, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP73335149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP73335MF_02048150, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048150) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP73335MF_02048150, 1, (STRLEN(?targetMotifMatchCigarP73335MF_02048150) - STRLEN(REPLACE(?targetMotifMatchCigarP73335MF_02048150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_02048151) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02048a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
}
"xsd:string |
